Protein–RNA interactions for Protein: Q96AX1

VPS33A, Vacuolar protein sorting-associated protein 33A, humanhuman

Predictions only

Length 596 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33AQ96AX1 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS33AQ96AX1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
VPS33AQ96AX1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.88
VPS33AQ96AX1 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
VPS33AQ96AX1 GTSE1-AS1-202ENST00000623117 1518 ntBASIC20.58■□□□□ 0.88
VPS33AQ96AX1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 EPDR1-201ENST00000199448 2599 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
VPS33AQ96AX1 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 TST-201ENST00000249042 1211 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 AL031602.1-201ENST00000633169 911 ntBASIC20.56■□□□□ 0.88
VPS33AQ96AX1 RASGRP1-201ENST00000310803 5023 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 RASGRP1-204ENST00000539159 5021 ntAPPRIS ALT1 TSL 5 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 NEU4-204ENST00000405370 1907 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.56■□□□□ 0.88
VPS33AQ96AX1 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 AL451085.2-201ENST00000605085 799 ntBASIC20.55■□□□□ 0.88
VPS33AQ96AX1 AL117332.1-201ENST00000622628 974 ntBASIC20.55■□□□□ 0.88
VPS33AQ96AX1 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 ZNF446-208ENST00000622313 1884 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 CDK5R2-201ENST00000302625 2508 ntAPPRIS P1 BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 SCRT1-201ENST00000569446 3779 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
VPS33AQ96AX1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 AC009299.2-201ENST00000482477 511 ntBASIC20.54■□□□□ 0.88
VPS33AQ96AX1 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC20.54■□□□□ 0.88
VPS33AQ96AX1 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 AC079089.2-201ENST00000531211 1277 ntBASIC20.53■□□□□ 0.88
VPS33AQ96AX1 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 FRMD3-204ENST00000376438 2198 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 AC133637.1-201ENST00000624115 1537 ntBASIC20.53■□□□□ 0.88
VPS33AQ96AX1 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
VPS33AQ96AX1 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 ZNF467-201ENST00000302017 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 CA9-204ENST00000617161 1374 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 AC006455.2-201ENST00000429931 906 ntBASIC20.52■□□□□ 0.88
VPS33AQ96AX1 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
VPS33AQ96AX1 GFRA4-201ENST00000290417 1427 ntAPPRIS ALT2 TSL 1 (best) BASIC20.52■□□□□ 0.87
VPS33AQ96AX1 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC20.52■□□□□ 0.87
VPS33AQ96AX1 HES5-201ENST00000378453 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms