Protein–RNA interactions for Protein: Q7Z3B4

NUP54, Nucleoporin p54, humanhuman

Predictions only

Length 507 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54Q7Z3B4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 MIR6084-201ENST00000622012 110 ntBASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
NUP54Q7Z3B4 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 TERT-206ENST00000508104 2486 ntTSL 5 BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 AL034346.1-201ENST00000568244 1277 ntBASIC19.83■□□□□ 0.77
NUP54Q7Z3B4 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC19.83■□□□□ 0.76
NUP54Q7Z3B4 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NUP54Q7Z3B4 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
NUP54Q7Z3B4 AC092053.2-201ENST00000640557 1818 ntBASIC19.83■□□□□ 0.76
NUP54Q7Z3B4 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.83■□□□□ 0.76
NUP54Q7Z3B4 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.76
NUP54Q7Z3B4 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 EP400NL-214ENST00000641289 2402 ntBASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 AC123595.1-201ENST00000440769 1046 ntBASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 SP2-202ENST00000613139 908 ntTSL 5 BASIC19.82■□□□□ 0.76
NUP54Q7Z3B4 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 ATP11C-203ENST00000370557 6924 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 ZDHHC14-204ENST00000414563 3134 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 ASL-203ENST00000380839 1765 ntTSL 5 BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC19.81■□□□□ 0.76
NUP54Q7Z3B4 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 AC009237.3-201ENST00000393279 1427 ntBASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 YBX1P1-201ENST00000445822 960 ntBASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 FAM222B-213ENST00000583522 556 ntTSL 2 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC19.8■□□□□ 0.76
NUP54Q7Z3B4 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 CCZ1B-201ENST00000316731 2885 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 AP004607.7-201ENST00000527152 1677 ntBASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 MIR935-201ENST00000401179 91 ntBASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 LRRC37A17P-202ENST00000570478 572 ntTSL 4 BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 MIR6821-201ENST00000617625 74 ntBASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 AC080038.3-201ENST00000623346 1952 ntBASIC19.79■□□□□ 0.76
NUP54Q7Z3B4 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 METTL23-201ENST00000341249 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 AC097381.1-201ENST00000429019 1296 ntBASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 LINC02228-203ENST00000641970 1355 ntBASIC19.78■□□□□ 0.76
NUP54Q7Z3B4 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC19.78■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms