Protein–RNA interactions for Protein: Q5TC82

RC3H1, Roquin-1, humanhuman

Known RBP Predictions only

Length 1,133 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RC3H1Q5TC82 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC27.4■■□□□ 1.98
RC3H1Q5TC82 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC27.4■■□□□ 1.98
RC3H1Q5TC82 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC27.4■■□□□ 1.98
RC3H1Q5TC82 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC27.39■■□□□ 1.98
RC3H1Q5TC82 GDF6-203ENST00000621429 1179 ntTSL 5 BASIC27.39■■□□□ 1.98
RC3H1Q5TC82 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC27.39■■□□□ 1.98
RC3H1Q5TC82 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC27.39■■□□□ 1.98
RC3H1Q5TC82 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC27.39■■□□□ 1.97
RC3H1Q5TC82 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 STEAP1-201ENST00000297205 1313 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC27.38■■□□□ 1.97
RC3H1Q5TC82 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 MFSD3-201ENST00000301327 1548 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 CIRBP-211ENST00000586773 942 ntAPPRIS ALT1 TSL 2 BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 AK8-201ENST00000298545 2072 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC27.37■■□□□ 1.97
RC3H1Q5TC82 GSEC-202ENST00000629441 1572 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 AC093787.1-201ENST00000450396 207 ntBASIC27.36■■□□□ 1.97
RC3H1Q5TC82 ZNF346-203ENST00000503425 1191 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 PHB2-213ENST00000546111 858 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 Z92544.1-201ENST00000567091 730 ntTSL 3 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 AL034346.1-201ENST00000568244 1277 ntBASIC27.36■■□□□ 1.97
RC3H1Q5TC82 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 TRABD2A-203ENST00000409520 1975 ntAPPRIS P1 TSL 1 (best) BASIC27.36■■□□□ 1.97
RC3H1Q5TC82 PYURF-201ENST00000273968 1361 ntAPPRIS P1 TSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 AC021660.2-201ENST00000502999 388 ntTSL 3 BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 LINC01960-201ENST00000563759 1884 ntBASIC27.35■■□□□ 1.97
RC3H1Q5TC82 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC27.35■■□□□ 1.97
RC3H1Q5TC82 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 FAM47E-204ENST00000510328 1002 ntAPPRIS ALT2 TSL 2 BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 AL772284.2-201ENST00000620151 1147 ntAPPRIS P1 TSL 5 BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 MYC-209ENST00000641252 345 ntBASIC27.34■■□□□ 1.97
RC3H1Q5TC82 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.97
RC3H1Q5TC82 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 OR7E47P-201ENST00000546390 1422 ntBASIC27.33■■□□□ 1.97
RC3H1Q5TC82 ZNF837-202ENST00000597582 1969 ntAPPRIS P1 TSL 2 BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 VPS29-206ENST00000549578 1523 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 AC069236.1-201ENST00000604339 616 ntBASIC27.33■■□□□ 1.97
RC3H1Q5TC82 CSNK1G3-206ENST00000511130 1356 ntTSL 2 BASIC27.33■■□□□ 1.97
RC3H1Q5TC82 AC092068.2-201ENST00000590491 1708 ntBASIC27.33■■□□□ 1.96
RC3H1Q5TC82 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 ANKRD10-202ENST00000310847 1193 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 HSD17B10-202ENST00000375298 823 ntTSL 3 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 AC108693.2-201ENST00000492981 303 ntTSL 3 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 AC016405.3-201ENST00000607710 860 ntBASIC27.32■■□□□ 1.96
RC3H1Q5TC82 AC083880.1-201ENST00000608266 535 ntBASIC27.32■■□□□ 1.96
RC3H1Q5TC82 OGFR-204ENST00000621591 1194 ntTSL 5 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 AC008694.1-202ENST00000636953 945 ntBASIC27.32■■□□□ 1.96
RC3H1Q5TC82 TPD52L1-203ENST00000368402 1308 ntTSL 1 (best) BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC27.32■■□□□ 1.96
RC3H1Q5TC82 PAPD7-201ENST00000230859 5459 ntTSL 1 (best) BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 MEA1-201ENST00000244711 1089 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 INS-203ENST00000397262 639 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 TMEM9-209ENST00000485839 938 ntAPPRIS P3 TSL 2 BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC27.31■■□□□ 1.96
RC3H1Q5TC82 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC27.31■■□□□ 1.96
Retrieved 100 of 98,524 protein–RNA pairs in 22.7 ms