Protein–RNA interactions for Protein: Q00526

CDK3, Cyclin-dependent kinase 3, humanhuman

Predictions only

Length 305 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDK3Q00526 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.19■□□□□ 0.98
CDK3Q00526 TMEM54-202ENST00000373463 999 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC21.19■□□□□ 0.98
CDK3Q00526 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC21.19■□□□□ 0.98
CDK3Q00526 AC024267.6-201ENST00000580603 583 ntTSL 3 BASIC21.19■□□□□ 0.98
CDK3Q00526 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC21.19■□□□□ 0.98
CDK3Q00526 DONSON-210ENST00000453626 2332 ntTSL 5 BASIC21.19■□□□□ 0.98
CDK3Q00526 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC21.19■□□□□ 0.98
CDK3Q00526 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.19■□□□□ 0.98
CDK3Q00526 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
CDK3Q00526 GALC-202ENST00000393568 2054 ntTSL 2 BASIC21.19■□□□□ 0.98
CDK3Q00526 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.19■□□□□ 0.98
CDK3Q00526 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDK3Q00526 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CDK3Q00526 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDK3Q00526 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDK3Q00526 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CDK3Q00526 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
CDK3Q00526 ME3-201ENST00000323418 1068 ntTSL 5 BASIC21.18■□□□□ 0.98
CDK3Q00526 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
CDK3Q00526 KRT19P1-201ENST00000405746 1186 ntBASIC21.18■□□□□ 0.98
CDK3Q00526 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.18■□□□□ 0.98
CDK3Q00526 ATPIF1-204ENST00000497986 599 ntTSL 2 BASIC21.18■□□□□ 0.98
CDK3Q00526 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC21.18■□□□□ 0.98
CDK3Q00526 C12orf43-208ENST00000539736 1033 ntAPPRIS ALT2 TSL 2 BASIC21.18■□□□□ 0.98
CDK3Q00526 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC21.18■□□□□ 0.98
CDK3Q00526 AL137784.2-201ENST00000607332 1000 ntBASIC21.18■□□□□ 0.98
CDK3Q00526 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDK3Q00526 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC21.18■□□□□ 0.98
CDK3Q00526 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.18■□□□□ 0.98
CDK3Q00526 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
CDK3Q00526 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC21.17■□□□□ 0.98
CDK3Q00526 TMEM268-202ENST00000374049 4578 ntAPPRIS ALT1 TSL 5 BASIC21.17■□□□□ 0.98
CDK3Q00526 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC21.17■□□□□ 0.98
CDK3Q00526 FXN-202ENST00000396364 980 ntTSL 5 BASIC21.17■□□□□ 0.98
CDK3Q00526 CAMKMT-202ENST00000402247 665 ntTSL 2 BASIC21.17■□□□□ 0.98
CDK3Q00526 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC21.17■□□□□ 0.98
CDK3Q00526 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC21.17■□□□□ 0.98
CDK3Q00526 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC21.17■□□□□ 0.98
CDK3Q00526 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDK3Q00526 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDK3Q00526 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDK3Q00526 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC21.17■□□□□ 0.98
CDK3Q00526 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
CDK3Q00526 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
CDK3Q00526 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDK3Q00526 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDK3Q00526 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.16■□□□□ 0.98
CDK3Q00526 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDK3Q00526 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC21.16■□□□□ 0.98
CDK3Q00526 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.16■□□□□ 0.98
CDK3Q00526 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.16■□□□□ 0.98
CDK3Q00526 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21.16■□□□□ 0.98
CDK3Q00526 ZFPL1-203ENST00000525509 478 ntTSL 2 BASIC21.16■□□□□ 0.98
CDK3Q00526 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
CDK3Q00526 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.15■□□□□ 0.98
CDK3Q00526 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDK3Q00526 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDK3Q00526 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDK3Q00526 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDK3Q00526 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
CDK3Q00526 STX7-201ENST00000367937 1090 ntTSL 5 BASIC21.15■□□□□ 0.98
CDK3Q00526 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.15■□□□□ 0.98
CDK3Q00526 DBI-210ENST00000542275 757 ntTSL 5 BASIC21.15■□□□□ 0.98
CDK3Q00526 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC21.15■□□□□ 0.98
CDK3Q00526 AC137761.2-201ENST00000561729 223 ntBASIC21.15■□□□□ 0.98
CDK3Q00526 AC145350.3-201ENST00000569033 163 ntBASIC21.15■□□□□ 0.98
CDK3Q00526 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
CDK3Q00526 CCNE1-201ENST00000262643 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
CDK3Q00526 FAM193A-211ENST00000637812 4885 ntAPPRIS ALT2 TSL 5 BASIC21.15■□□□□ 0.98
CDK3Q00526 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.15■□□□□ 0.98
CDK3Q00526 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
CDK3Q00526 PTPRM-201ENST00000332175 6095 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.98
CDK3Q00526 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDK3Q00526 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDK3Q00526 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
CDK3Q00526 AC104187.1-201ENST00000607510 612 ntBASIC21.14■□□□□ 0.97
CDK3Q00526 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.14■□□□□ 0.97
CDK3Q00526 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC21.14■□□□□ 0.97
CDK3Q00526 EPS8L1-205ENST00000586329 2130 ntTSL 5 BASIC21.14■□□□□ 0.97
CDK3Q00526 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
CDK3Q00526 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.14■□□□□ 0.97
CDK3Q00526 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDK3Q00526 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDK3Q00526 AC068473.5-201ENST00000616428 2072 ntBASIC21.13■□□□□ 0.97
CDK3Q00526 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
CDK3Q00526 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
CDK3Q00526 AC004911.1-201ENST00000416316 871 ntBASIC21.13■□□□□ 0.97
CDK3Q00526 GRPEL2-202ENST00000416916 1006 ntTSL 2 BASIC21.13■□□□□ 0.97
CDK3Q00526 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.13■□□□□ 0.97
CDK3Q00526 IMPA2-212ENST00000625802 500 ntTSL 2 BASIC21.13■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 65.2 ms