Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC19.89■□□□□ 0.77
RNF4P78317 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RNF4P78317 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC19.89■□□□□ 0.77
RNF4P78317 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.89■□□□□ 0.77
RNF4P78317 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC19.89■□□□□ 0.77
RNF4P78317 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC19.89■□□□□ 0.77
RNF4P78317 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
RNF4P78317 AP003071.3-201ENST00000562506 366 ntTSL 3 BASIC19.89■□□□□ 0.77
RNF4P78317 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
RNF4P78317 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
RNF4P78317 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC19.88■□□□□ 0.77
RNF4P78317 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF4P78317 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 GZMM-201ENST00000264553 940 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF4P78317 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.88■□□□□ 0.77
RNF4P78317 AP001005.4-202ENST00000575325 560 ntTSL 4 BASIC19.88■□□□□ 0.77
RNF4P78317 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.88■□□□□ 0.77
RNF4P78317 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
RNF4P78317 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
RNF4P78317 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
RNF4P78317 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
RNF4P78317 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC19.87■□□□□ 0.77
RNF4P78317 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
RNF4P78317 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC19.87■□□□□ 0.77
RNF4P78317 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC19.87■□□□□ 0.77
RNF4P78317 GUSBP5-202ENST00000510805 1989 ntBASIC19.87■□□□□ 0.77
RNF4P78317 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF4P78317 ACYP2-201ENST00000303536 789 ntTSL 2 BASIC19.87■□□□□ 0.77
RNF4P78317 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC19.87■□□□□ 0.77
RNF4P78317 BRD2-214ENST00000496118 735 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF4P78317 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC19.87■□□□□ 0.77
RNF4P78317 AC242852.2-201ENST00000615738 1807 ntBASIC19.87■□□□□ 0.77
RNF4P78317 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
RNF4P78317 NPAS3-210ENST00000551492 2817 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
RNF4P78317 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF4P78317 ACSF2-207ENST00000504392 1881 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF4P78317 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF4P78317 AC055733.4-201ENST00000638462 1354 ntBASIC19.86■□□□□ 0.77
RNF4P78317 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF4P78317 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF4P78317 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF4P78317 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC19.86■□□□□ 0.77
RNF4P78317 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
RNF4P78317 KRT18P5-201ENST00000436075 1291 ntBASIC19.86■□□□□ 0.77
RNF4P78317 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF4P78317 Z97653.1-201ENST00000567096 446 ntTSL 3 BASIC19.86■□□□□ 0.77
RNF4P78317 PTPRM-211ENST00000580170 5941 ntAPPRIS ALT2 TSL 1 (best) BASIC19.86■□□□□ 0.77
RNF4P78317 TANGO2-202ENST00000398042 2011 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF4P78317 AC012676.1-201ENST00000574705 1949 ntBASIC19.86■□□□□ 0.77
RNF4P78317 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC19.86■□□□□ 0.77
RNF4P78317 AC092053.2-201ENST00000640557 1818 ntBASIC19.86■□□□□ 0.77
RNF4P78317 AC133561.1-201ENST00000568600 2415 ntBASIC19.85■□□□□ 0.77
RNF4P78317 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC19.85■□□□□ 0.77
RNF4P78317 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC19.85■□□□□ 0.77
RNF4P78317 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC19.85■□□□□ 0.77
RNF4P78317 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC19.85■□□□□ 0.77
RNF4P78317 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.85■□□□□ 0.77
RNF4P78317 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 AC079140.4-201ENST00000507448 529 ntBASIC19.85■□□□□ 0.77
RNF4P78317 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC19.85■□□□□ 0.77
RNF4P78317 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 NTF6G-201ENST00000591094 616 ntBASIC19.85■□□□□ 0.77
RNF4P78317 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
RNF4P78317 SLC35A2-212ENST00000634665 486 ntTSL 4 BASIC19.85■□□□□ 0.77
RNF4P78317 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC19.85■□□□□ 0.77
RNF4P78317 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 AP006587.3-201ENST00000525742 1516 ntBASIC19.85■□□□□ 0.77
RNF4P78317 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
RNF4P78317 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC19.84■□□□□ 0.77
RNF4P78317 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC19.84■□□□□ 0.77
RNF4P78317 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 NHLRC4-202ENST00000540585 2071 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC19.84■□□□□ 0.77
RNF4P78317 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.84■□□□□ 0.77
RNF4P78317 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.84■□□□□ 0.77
RNF4P78317 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
RNF4P78317 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 P4HTM-201ENST00000343546 2268 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
RNF4P78317 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC19.84■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 169.9 ms