Protein–RNA interactions for Protein: P55854

SUMO3, Small ubiquitin-related modifier 3, humanhuman

Predicted RBP Predictions only

Length 103 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SUMO3P55854 LBX2-202ENST00000377566 1186 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SUMO3P55854 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC19.49■□□□□ 0.71
SUMO3P55854 SLC39A3-203ENST00000545664 1219 ntTSL 2 BASIC19.49■□□□□ 0.71
SUMO3P55854 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SUMO3P55854 DPF1-206ENST00000420980 2227 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SUMO3P55854 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
SUMO3P55854 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
SUMO3P55854 HLA-C-203ENST00000383329 1554 ntAPPRIS ALT2 BASIC19.49■□□□□ 0.71
SUMO3P55854 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 GUK1-205ENST00000366722 850 ntTSL 3 BASIC19.48■□□□□ 0.71
SUMO3P55854 MOSPD3-203ENST00000393950 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 NT5C3AP1-201ENST00000394500 1012 ntBASIC19.48■□□□□ 0.71
SUMO3P55854 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SUMO3P55854 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC19.48■□□□□ 0.71
SUMO3P55854 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 AC005224.4-201ENST00000583262 1652 ntBASIC19.48■□□□□ 0.71
SUMO3P55854 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
SUMO3P55854 SYNGR2-203ENST00000588282 1553 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
SUMO3P55854 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 SLC25A29-202ENST00000392908 2242 ntTSL 2 BASIC19.47■□□□□ 0.71
SUMO3P55854 CYC1-201ENST00000318911 1240 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 CDKN2AIPNL-201ENST00000395009 800 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 ZNRF2P3-201ENST00000424200 374 ntBASIC19.47■□□□□ 0.71
SUMO3P55854 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 TPRG1LP1-201ENST00000598702 760 ntBASIC19.47■□□□□ 0.71
SUMO3P55854 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC19.47■□□□□ 0.71
SUMO3P55854 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 NFKBIL1-203ENST00000376148 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
SUMO3P55854 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC19.46■□□□□ 0.71
SUMO3P55854 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SUMO3P55854 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC19.46■□□□□ 0.71
SUMO3P55854 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC19.46■□□□□ 0.71
SUMO3P55854 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC19.46■□□□□ 0.71
SUMO3P55854 MIR6084-201ENST00000622012 110 ntBASIC19.46■□□□□ 0.71
SUMO3P55854 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
SUMO3P55854 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC19.46■□□□□ 0.71
SUMO3P55854 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.46■□□□□ 0.71
SUMO3P55854 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 HOMER1-202ENST00000334082 5881 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
SUMO3P55854 AC079328.2-202ENST00000560903 1410 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 FXN-202ENST00000396364 980 ntTSL 5 BASIC19.45■□□□□ 0.7
SUMO3P55854 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 LGR4-203ENST00000480977 492 ntTSL 2 BASIC19.45■□□□□ 0.7
SUMO3P55854 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC19.45■□□□□ 0.7
SUMO3P55854 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC19.45■□□□□ 0.7
SUMO3P55854 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC19.45■□□□□ 0.7
SUMO3P55854 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 DACT1-201ENST00000335867 2571 ntAPPRIS P3 TSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 C16orf59-201ENST00000361837 1662 ntAPPRIS P2 TSL 1 (best) BASIC19.45■□□□□ 0.7
SUMO3P55854 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC19.45■□□□□ 0.7
SUMO3P55854 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC19.44■□□□□ 0.7
SUMO3P55854 AC055733.4-201ENST00000638462 1354 ntBASIC19.44■□□□□ 0.7
SUMO3P55854 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC19.44■□□□□ 0.7
SUMO3P55854 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC19.44■□□□□ 0.7
SUMO3P55854 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SUMO3P55854 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC19.44■□□□□ 0.7
SUMO3P55854 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SUMO3P55854 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC19.44■□□□□ 0.7
SUMO3P55854 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC19.44■□□□□ 0.7
SUMO3P55854 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SUMO3P55854 JTB-203ENST00000368589 1216 ntTSL 2 BASIC19.44■□□□□ 0.7
SUMO3P55854 LAMP5-AS1-201ENST00000443469 1928 ntTSL 2 BASIC19.44■□□□□ 0.7
SUMO3P55854 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC19.44■□□□□ 0.7
SUMO3P55854 NAA35-202ENST00000376040 1797 ntTSL 2 BASIC19.44■□□□□ 0.7
SUMO3P55854 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
SUMO3P55854 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC19.44■□□□□ 0.7
SUMO3P55854 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC19.44■□□□□ 0.7
SUMO3P55854 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC19.43■□□□□ 0.7
SUMO3P55854 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SUMO3P55854 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC19.43■□□□□ 0.7
SUMO3P55854 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SUMO3P55854 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.43■□□□□ 0.7
SUMO3P55854 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.43■□□□□ 0.7
SUMO3P55854 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC19.43■□□□□ 0.7
SUMO3P55854 AC123595.1-201ENST00000440769 1046 ntBASIC19.43■□□□□ 0.7
SUMO3P55854 YBX1P1-201ENST00000445822 960 ntBASIC19.43■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 55.8 ms