Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 AC099791.1-201ENST00000416440 715 ntBASIC20.1■□□□□ 0.81
RFX3P48380 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC20.1■□□□□ 0.81
RFX3P48380 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC20.1■□□□□ 0.81
RFX3P48380 CA15P2-201ENST00000611168 834 ntBASIC20.1■□□□□ 0.81
RFX3P48380 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.1■□□□□ 0.81
RFX3P48380 SRP68-201ENST00000307877 2649 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 GPR157-201ENST00000377411 5265 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC20.1■□□□□ 0.81
RFX3P48380 FAM83D-201ENST00000619304 2475 ntTSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC20.1■□□□□ 0.81
RFX3P48380 AC092053.2-201ENST00000640557 1818 ntBASIC20.09■□□□□ 0.81
RFX3P48380 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC20.09■□□□□ 0.81
RFX3P48380 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC20.09■□□□□ 0.81
RFX3P48380 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.09■□□□□ 0.81
RFX3P48380 GRAMD4P2-201ENST00000423297 1097 ntBASIC20.09■□□□□ 0.81
RFX3P48380 AC010141.3-201ENST00000456659 717 ntBASIC20.09■□□□□ 0.81
RFX3P48380 MAG-206ENST00000597035 542 ntTSL 4 BASIC20.09■□□□□ 0.81
RFX3P48380 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.09■□□□□ 0.81
RFX3P48380 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.09■□□□□ 0.81
RFX3P48380 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.09■□□□□ 0.81
RFX3P48380 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RFX3P48380 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RFX3P48380 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RFX3P48380 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RFX3P48380 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC20.09■□□□□ 0.81
RFX3P48380 CACNA1I-204ENST00000407673 5952 ntAPPRIS ALT2 TSL 1 (best) BASIC20.09■□□□□ 0.81
RFX3P48380 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.08■□□□□ 0.81
RFX3P48380 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC20.08■□□□□ 0.81
RFX3P48380 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC20.08■□□□□ 0.81
RFX3P48380 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.81
RFX3P48380 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
RFX3P48380 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC20.08■□□□□ 0.81
RFX3P48380 AF213884.3-201ENST00000563833 479 ntBASIC20.08■□□□□ 0.81
RFX3P48380 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RFX3P48380 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC20.08■□□□□ 0.81
RFX3P48380 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
RFX3P48380 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RFX3P48380 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
RFX3P48380 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.08■□□□□ 0.8
RFX3P48380 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC20.07■□□□□ 0.8
RFX3P48380 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RFX3P48380 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.07■□□□□ 0.8
RFX3P48380 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 TRIM67-203ENST00000449018 2166 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 LMO4-202ENST00000370544 5405 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.07■□□□□ 0.8
RFX3P48380 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC20.07■□□□□ 0.8
RFX3P48380 EDA-201ENST00000338901 1233 ntBASIC20.07■□□□□ 0.8
RFX3P48380 AP001330.3-201ENST00000520123 633 ntBASIC20.07■□□□□ 0.8
RFX3P48380 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC20.07■□□□□ 0.8
RFX3P48380 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 SCO2-204ENST00000543927 1051 ntAPPRIS P1 TSL 2 BASIC20.07■□□□□ 0.8
RFX3P48380 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC20.07■□□□□ 0.8
RFX3P48380 AL355001.2-201ENST00000620617 1191 ntBASIC20.07■□□□□ 0.8
RFX3P48380 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.07■□□□□ 0.8
RFX3P48380 AOC3-207ENST00000617500 2392 ntTSL 4 BASIC20.07■□□□□ 0.8
RFX3P48380 SPTBN4-201ENST00000338932 8686 ntAPPRIS ALT1 TSL 5 BASIC20.07■□□□□ 0.8
RFX3P48380 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 GPR137B-202ENST00000366592 2042 ntAPPRIS P2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
RFX3P48380 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
RFX3P48380 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 PLPP7-202ENST00000372264 2095 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC20.06■□□□□ 0.8
RFX3P48380 NOTUM-201ENST00000409678 2329 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 AC079089.2-201ENST00000531211 1277 ntBASIC20.06■□□□□ 0.8
RFX3P48380 AC027682.1-201ENST00000562846 899 ntBASIC20.06■□□□□ 0.8
RFX3P48380 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC20.06■□□□□ 0.8
RFX3P48380 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC20.06■□□□□ 0.8
RFX3P48380 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC20.06■□□□□ 0.8
RFX3P48380 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
RFX3P48380 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
RFX3P48380 AKT2-234ENST00000579047 2029 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC20.05■□□□□ 0.8
RFX3P48380 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
RFX3P48380 C20orf144-201ENST00000375222 571 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC20.05■□□□□ 0.8
RFX3P48380 AP005435.1-201ENST00000529293 1178 ntBASIC20.05■□□□□ 0.8
RFX3P48380 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC20.05■□□□□ 0.8
RFX3P48380 ACAP1-206ENST00000571471 320 ntTSL 2 BASIC20.05■□□□□ 0.8
RFX3P48380 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC20.05■□□□□ 0.8
RFX3P48380 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC20.05■□□□□ 0.8
RFX3P48380 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
RFX3P48380 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.05■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 21.9 ms