Protein–RNA interactions for Protein: H3BT56

CHKB-CPT1B, CHKB-CPT1B readthrough (NMD candidate) (Fragment), humanhuman

Predictions only

Length 60 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHKB-CPT1BH3BT56 SLIT1-201ENST00000266058 7925 ntAPPRIS P1 TSL 1 (best) BASIC12.03□□□□□ -0.48
CHKB-CPT1BH3BT56 FOXP4-205ENST00000409208 3341 ntAPPRIS P1 TSL 5 BASIC12.03□□□□□ -0.48
CHKB-CPT1BH3BT56 CDK5R1-201ENST00000313401 4325 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 CHKA-202ENST00000356135 1755 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 KAZN-207ENST00000503743 1475 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 KCTD7-206ENST00000639828 5951 ntAPPRIS P3 TSL 2 BASIC12.02□□□□□ -0.48
CHKB-CPT1BH3BT56 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 SAP30-201ENST00000296504 1108 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 PRKY-203ENST00000528056 7218 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 FEZ1-201ENST00000278919 1748 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 KIF16B-201ENST00000354981 5261 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 CCND3-205ENST00000415497 1843 ntTSL 2 BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 PLXNB1-202ENST00000358536 7308 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 ITSN1-204ENST00000381285 6107 ntTSL 5 BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 RAP2C-202ENST00000370874 2333 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
CHKB-CPT1BH3BT56 GRIN3B-201ENST00000234389 3281 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 ZNF516-201ENST00000443185 8118 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 SARM1-208ENST00000585482 10309 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 PHACTR2-203ENST00000367584 2490 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 CDK11B-208ENST00000629289 2490 ntTSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 CDK11B-209ENST00000629312 2496 ntTSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 RUNX1T1-246ENST00000523629 7537 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 VAX1-202ENST00000369206 1723 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 OPA1-208ENST00000392438 6340 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 NKX1-1-201ENST00000422806 1236 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 DYNLL1-207ENST00000549989 719 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 DYNLL1-208ENST00000550178 581 ntBASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 DISC1-209ENST00000439617 7059 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 C16orf58-202ENST00000430477 2471 ntAPPRIS P2 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 GATA2-202ENST00000430265 2525 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 COMT-204ENST00000403710 1548 ntAPPRIS P3 TSL 5 BASIC12.01□□□□□ -0.49
CHKB-CPT1BH3BT56 ASCL4-201ENST00000342331 2260 ntAPPRIS P1 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 CDS2-203ENST00000460006 9298 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 AP002884.3-203ENST00000419895 1711 ntTSL 2 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 OSBPL10-201ENST00000396556 6600 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 SHTN1-202ENST00000355371 5361 ntAPPRIS ALT1 TSL 2 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 ZNF669-201ENST00000343381 1951 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 GNPTAB-202ENST00000392919 760 ntTSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 PSPH-202ENST00000395471 2178 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 EVA1C-203ENST00000401402 1558 ntTSL 5 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 CRELD2-203ENST00000404488 1577 ntAPPRIS ALT2 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 ZNF470-206ENST00000601902 1640 ntTSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 SDK1-210ENST00000615806 10258 ntAPPRIS ALT2 TSL 5 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 SPEG-201ENST00000312358 10782 ntAPPRIS P1 TSL 5 BASIC12□□□□□ -0.49
CHKB-CPT1BH3BT56 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 KCTD1-202ENST00000408011 2103 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 SNED1-204ENST00000401884 4538 ntAPPRIS ALT2 TSL 5 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 POM121-202ENST00000395270 7011 ntAPPRIS ALT2 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 MXD3-201ENST00000423571 1534 ntTSL 2 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 MEF2A-207ENST00000558812 2186 ntTSL 2 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 FBXO21-208ENST00000622495 6040 ntAPPRIS ALT1 TSL 1 (best) BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 DENND4C-209ENST00000602925 6831 ntAPPRIS P1 TSL 5 BASIC11.99□□□□□ -0.49
CHKB-CPT1BH3BT56 EFCAB2-202ENST00000366522 6167 ntTSL 2 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 SPOCK2-202ENST00000373109 5445 ntAPPRIS P2 TSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 TPD52-209ENST00000518937 2856 ntTSL 2 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 PRKG2-207ENST00000628926 2623 ntTSL 2 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 DNAAF3-201ENST00000391720 2169 ntAPPRIS P3 TSL 2 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 SLC6A10P-202ENST00000431994 2058 ntBASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 BID-212ENST00000614949 1988 ntTSL 5 BASIC11.98□□□□□ -0.49
CHKB-CPT1BH3BT56 POLR2H-208ENST00000456318 1802 ntAPPRIS P1 TSL 5 BASIC11.98□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms