Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 SPG21-201ENST00000204566 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 TERF1P5-201ENST00000477545 1207 ntBASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 BEX2-204ENST00000536889 1077 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 AC069236.1-201ENST00000604339 616 ntBASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 AL359736.2-201ENST00000621992 437 ntBASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 TAZ-213ENST00000601016 1889 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 DUSP28-201ENST00000343217 1555 ntAPPRIS P1 TSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 ARHGEF9-210ENST00000623517 2143 ntTSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 DLG3-203ENST00000374360 5905 ntAPPRIS P2 TSL 1 (best) BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC19.57■□□□□ 0.72
COL6A6A6NMZ7 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 C10orf91-201ENST00000321248 1257 ntTSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 CLN6-206ENST00000565471 1075 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.56■□□□□ 0.72
COL6A6A6NMZ7 BDH1-207ENST00000441275 1605 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 PTS-201ENST00000280362 935 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 ART5-202ENST00000397067 1154 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 BX088651.1-201ENST00000540551 451 ntBASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 AC108025.1-201ENST00000453678 1058 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 AC091564.5-201ENST00000526456 820 ntTSL 4 BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 C17orf62-230ENST00000583617 866 ntTSL 5 BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
COL6A6A6NMZ7 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 FAM98C-205ENST00000588262 826 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 PDIA6-201ENST00000272227 2338 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 ZNF692-201ENST00000306601 1931 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 TMEM191C-214ENST00000621561 1337 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 KRT18P21-201ENST00000515767 1272 ntBASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 AL162412.1-201ENST00000567129 965 ntBASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 AC122129.2-201ENST00000583598 466 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 WDR88-203ENST00000592765 651 ntTSL 5 BASIC19.54■□□□□ 0.72
COL6A6A6NMZ7 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 KRT7-201ENST00000331817 1754 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 LINC00471-201ENST00000313064 1282 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 AC093787.1-201ENST00000450396 207 ntBASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 SNORA78-201ENST00000459373 127 ntBASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 GCFC2-207ENST00000470503 1066 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 LYRM1-205ENST00000562740 931 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 DGCR6-201ENST00000331444 1214 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.53■□□□□ 0.72
COL6A6A6NMZ7 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 EZH2-206ENST00000478654 2522 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 CXCL3-201ENST00000296026 1075 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 MDFI-202ENST00000373050 809 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 FLYWCH2-202ENST00000396958 1036 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 F2RL3-202ENST00000599210 613 ntTSL 2 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 CASTOR1-201ENST00000404953 1460 ntTSL 5 BASIC19.52■□□□□ 0.72
COL6A6A6NMZ7 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
COL6A6A6NMZ7 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 AC079630.1-202ENST00000618127 1840 ntBASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 NUDT22-204ENST00000441250 986 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 ZNF134-203ENST00000600344 483 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COL6A6A6NMZ7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 18.7 ms