Protein–RNA interactions for Protein: Q99801

NKX3-1, Homeobox protein Nkx-3.1, humanhuman

Predicted RBP Predictions only

Length 234 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX3-1Q99801 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
NKX3-1Q99801 AC026471.6-201ENST00000622954 1905 ntBASIC18.72■□□□□ 0.59
NKX3-1Q99801 ARID1B-220ENST00000636930 8246 ntAPPRIS ALT2 TSL 2 BASIC18.72■□□□□ 0.59
NKX3-1Q99801 FGFR1-214ENST00000447712 5900 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 NKX6-1-202ENST00000515820 2194 ntTSL 3 BASIC18.72■□□□□ 0.59
NKX3-1Q99801 TMUB1-201ENST00000297533 1353 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC18.72■□□□□ 0.59
NKX3-1Q99801 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 C17orf82-201ENST00000623772 1530 ntBASIC18.72■□□□□ 0.59
NKX3-1Q99801 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 DOCK5-208ENST00000481100 2166 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 KCNIP2-207ENST00000358038 2489 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
NKX3-1Q99801 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC18.71■□□□□ 0.59
NKX3-1Q99801 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
NKX3-1Q99801 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 KCNJ12-202ENST00000583088 5425 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 LSM4-201ENST00000252816 986 ntTSL 2 BASIC18.71■□□□□ 0.59
NKX3-1Q99801 MAGI2-AS3-201ENST00000414797 1072 ntTSL 2 BASIC18.71■□□□□ 0.59
NKX3-1Q99801 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
NKX3-1Q99801 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC18.71■□□□□ 0.59
NKX3-1Q99801 RMI2-201ENST00000312499 1457 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
NKX3-1Q99801 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 ARHGEF7-202ENST00000317133 4361 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 AC010997.5-201ENST00000609182 354 ntBASIC18.7■□□□□ 0.58
NKX3-1Q99801 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.7■□□□□ 0.58
NKX3-1Q99801 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 PSIP1-201ENST00000380715 1966 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
NKX3-1Q99801 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 TFPT-201ENST00000391757 774 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 CA15P2-201ENST00000611168 834 ntBASIC18.69■□□□□ 0.58
NKX3-1Q99801 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.69■□□□□ 0.58
NKX3-1Q99801 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 HTATIP2-204ENST00000451739 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
NKX3-1Q99801 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX3-1Q99801 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX3-1Q99801 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
NKX3-1Q99801 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.68■□□□□ 0.58
NKX3-1Q99801 KLF14-201ENST00000583337 2827 ntAPPRIS P1 BASIC18.68■□□□□ 0.58
NKX3-1Q99801 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.68■□□□□ 0.58
NKX3-1Q99801 KRT16P3-201ENST00000439127 1283 ntBASIC18.68■□□□□ 0.58
NKX3-1Q99801 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX3-1Q99801 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC18.68■□□□□ 0.58
NKX3-1Q99801 MGEA5-205ENST00000439817 5043 ntTSL 5 BASIC18.68■□□□□ 0.58
NKX3-1Q99801 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX3-1Q99801 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
NKX3-1Q99801 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.68■□□□□ 0.58
NKX3-1Q99801 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 UBTD2-201ENST00000393792 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 MDK-202ENST00000395565 951 ntAPPRIS P2 TSL 2 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 ESYT2-201ENST00000251527 5960 ntAPPRIS P2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC18.67■□□□□ 0.58
NKX3-1Q99801 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 GMPPB-202ENST00000308388 1582 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.67■□□□□ 0.58
NKX3-1Q99801 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC18.67■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 20.6 ms