Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
SHROOM1Q2M3G4 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 NT5C-201ENST00000245552 954 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 EMC9-206ENST00000560403 872 ntTSL 2 BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 AC005410.1-201ENST00000579522 462 ntTSL 3 BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 MFF-207ENST00000409565 1548 ntTSL 2 BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC25.31■■□□□ 1.64
SHROOM1Q2M3G4 RGS6-209ENST00000553525 2005 ntAPPRIS ALT1 TSL 2 BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 MBOAT7-205ENST00000431666 2471 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 SERP1-208ENST00000491660 830 ntTSL 2 BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 RNF19B-202ENST00000356990 2598 ntTSL 1 (best) BASIC25.3■■□□□ 1.64
SHROOM1Q2M3G4 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 PTH1R-201ENST00000313049 2123 ntAPPRIS P1 TSL 1 (best) BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 NCF1B-203ENST00000435988 1254 ntBASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 DUX4L16-201ENST00000555130 1264 ntBASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 AP001160.3-201ENST00000601484 763 ntBASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 KCNQ4-204ENST00000509682 1926 ntAPPRIS ALT2 TSL 5 BASIC25.29■■□□□ 1.64
SHROOM1Q2M3G4 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 PKM-201ENST00000319622 2717 ntAPPRIS P5 TSL 2 BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 ARHGEF7-205ENST00000375739 5375 ntTSL 1 (best) BASIC25.28■■□□□ 1.64
SHROOM1Q2M3G4 AC137767.1-201ENST00000602918 1920 ntBASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 CTBP1-203ENST00000382952 2467 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 LHPP-202ENST00000368842 1622 ntAPPRIS P1 TSL 1 (best) BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 LRRC34-201ENST00000446859 1718 ntAPPRIS ALT2 TSL 2 BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 AL355802.2-201ENST00000402069 882 ntBASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 AL109923.1-201ENST00000618799 583 ntBASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 RBMS1-205ENST00000409972 1815 ntTSL 5 BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
SHROOM1Q2M3G4 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 SLC22A31-201ENST00000562855 1909 ntAPPRIS P1 TSL 5 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 KRT18P11-201ENST00000435214 1283 ntBASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 GAMT-205ENST00000640762 751 ntTSL 5 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 MSRB1-201ENST00000361871 1423 ntAPPRIS P2 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 OR7E47P-201ENST00000546390 1422 ntBASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25.26■■□□□ 1.63
SHROOM1Q2M3G4 AC080112.2-201ENST00000578774 2094 ntTSL 4 BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC25.25■■□□□ 1.63
SHROOM1Q2M3G4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 AC016888.1-201ENST00000585285 565 ntTSL 3 BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 CASK-201ENST00000378154 2494 ntTSL 5 BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
SHROOM1Q2M3G4 GCA-201ENST00000233612 1694 ntTSL 2 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 ADSS-201ENST00000366535 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 FJX1-201ENST00000317811 2450 ntAPPRIS P1 BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
SHROOM1Q2M3G4 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC25.23■■□□□ 1.63
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms