Protein–RNA interactions for Protein: P50479

PDLIM4, PDZ and LIM domain protein 4, humanhuman

Predictions only

Length 330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM4P50479 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDLIM4P50479 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC18.26■□□□□ 0.51
PDLIM4P50479 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.26■□□□□ 0.51
PDLIM4P50479 VSTM4-201ENST00000298454 2170 ntAPPRIS P3 TSL 2 BASIC18.26■□□□□ 0.51
PDLIM4P50479 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC18.26■□□□□ 0.51
PDLIM4P50479 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC18.26■□□□□ 0.51
PDLIM4P50479 CPT2-209ENST00000636935 803 ntTSL 5 BASIC18.26■□□□□ 0.51
PDLIM4P50479 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDLIM4P50479 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC18.26■□□□□ 0.51
PDLIM4P50479 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.26■□□□□ 0.51
PDLIM4P50479 ZFAND4-205ENST00000374371 2283 ntTSL 5 BASIC18.25■□□□□ 0.51
PDLIM4P50479 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC18.25■□□□□ 0.51
PDLIM4P50479 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC18.25■□□□□ 0.51
PDLIM4P50479 RAP1B-202ENST00000341355 714 ntAPPRIS P1 TSL 3 BASIC18.25■□□□□ 0.51
PDLIM4P50479 UHRF2-202ENST00000381373 802 ntTSL 3 BASIC18.25■□□□□ 0.51
PDLIM4P50479 AC099681.3-201ENST00000421500 939 ntTSL 4 BASIC18.25■□□□□ 0.51
PDLIM4P50479 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDLIM4P50479 BID-214ENST00000617586 542 ntTSL 5 BASIC18.25■□□□□ 0.51
PDLIM4P50479 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDLIM4P50479 ADARB2-202ENST00000381310 1810 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDLIM4P50479 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC18.25■□□□□ 0.51
PDLIM4P50479 MYH7B-209ENST00000618182 6197 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PDLIM4P50479 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.24■□□□□ 0.51
PDLIM4P50479 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PDLIM4P50479 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 KRT18P11-201ENST00000435214 1283 ntBASIC18.24■□□□□ 0.51
PDLIM4P50479 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 AC093627.4-202ENST00000479592 591 ntTSL 4 BASIC18.24■□□□□ 0.51
PDLIM4P50479 CHTF8-210ENST00000523421 766 ntTSL 3 BASIC18.24■□□□□ 0.51
PDLIM4P50479 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC18.24■□□□□ 0.51
PDLIM4P50479 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC18.24■□□□□ 0.51
PDLIM4P50479 GNAO1-211ENST00000570235 568 ntTSL 2 BASIC18.24■□□□□ 0.51
PDLIM4P50479 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC18.24■□□□□ 0.51
PDLIM4P50479 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC18.24■□□□□ 0.51
PDLIM4P50479 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC18.24■□□□□ 0.51
PDLIM4P50479 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC18.24■□□□□ 0.51
PDLIM4P50479 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC18.23■□□□□ 0.51
PDLIM4P50479 MID1IP1-203ENST00000457894 1902 ntAPPRIS P1 TSL 3 BASIC18.23■□□□□ 0.51
PDLIM4P50479 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PDLIM4P50479 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC18.23■□□□□ 0.51
PDLIM4P50479 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC18.23■□□□□ 0.51
PDLIM4P50479 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PDLIM4P50479 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC18.23■□□□□ 0.51
PDLIM4P50479 TRAPPC2L-213ENST00000567895 854 ntTSL 3 BASIC18.23■□□□□ 0.51
PDLIM4P50479 ANAPC11-219ENST00000583839 499 ntAPPRIS P1 TSL 2 BASIC18.23■□□□□ 0.51
PDLIM4P50479 SLC35A2-211ENST00000634461 533 ntTSL 4 BASIC18.23■□□□□ 0.51
PDLIM4P50479 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 AMER2-202ENST00000515384 3197 ntAPPRIS P1 BASIC18.23■□□□□ 0.51
PDLIM4P50479 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC18.23■□□□□ 0.51
PDLIM4P50479 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 AC009237.3-201ENST00000393279 1427 ntBASIC18.23■□□□□ 0.51
PDLIM4P50479 PDE5A-201ENST00000264805 3020 ntAPPRIS ALT2 TSL 1 (best) BASIC18.23■□□□□ 0.51
PDLIM4P50479 IL17RE-201ENST00000383814 2704 ntAPPRIS P2 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 ASL-203ENST00000380839 1765 ntTSL 5 BASIC18.22■□□□□ 0.51
PDLIM4P50479 DUSP8P3-201ENST00000399571 1760 ntBASIC18.22■□□□□ 0.51
PDLIM4P50479 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC18.22■□□□□ 0.51
PDLIM4P50479 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC18.22■□□□□ 0.51
PDLIM4P50479 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC18.22■□□□□ 0.51
PDLIM4P50479 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC18.22■□□□□ 0.51
PDLIM4P50479 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC18.22■□□□□ 0.51
PDLIM4P50479 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC18.22■□□□□ 0.51
PDLIM4P50479 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC18.21■□□□□ 0.51
PDLIM4P50479 TMEM102-202ENST00000396568 1962 ntAPPRIS P1 TSL 2 BASIC18.21■□□□□ 0.51
PDLIM4P50479 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC18.21■□□□□ 0.51
PDLIM4P50479 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 NRL-201ENST00000396995 810 ntTSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.21■□□□□ 0.51
PDLIM4P50479 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC18.21■□□□□ 0.51
PDLIM4P50479 AC073111.5-205ENST00000641717 521 ntBASIC18.21■□□□□ 0.51
PDLIM4P50479 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC18.21■□□□□ 0.51
PDLIM4P50479 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC18.21■□□□□ 0.51
PDLIM4P50479 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM4P50479 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC18.2■□□□□ 0.5
PDLIM4P50479 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC18.2■□□□□ 0.5
PDLIM4P50479 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM4P50479 WWOX-218ENST00000627394 894 ntTSL 5 BASIC18.2■□□□□ 0.5
PDLIM4P50479 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM4P50479 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC18.2■□□□□ 0.5
PDLIM4P50479 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC18.19■□□□□ 0.5
Retrieved 100 of 98,524 protein–RNA pairs in 46.7 ms