Protein–RNA interactions for Protein: P48431

SOX2, Transcription factor SOX-2, humanhuman

Predictions only

Length 317 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX2P48431 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX2P48431 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC18.91■□□□□ 0.62
SOX2P48431 NAA30-202ENST00000554703 795 ntTSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC18.91■□□□□ 0.62
SOX2P48431 MTDHP2-201ENST00000601468 714 ntBASIC18.91■□□□□ 0.62
SOX2P48431 ZXDC-201ENST00000336332 2579 ntAPPRIS ALT2 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC18.91■□□□□ 0.62
SOX2P48431 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC18.91■□□□□ 0.62
SOX2P48431 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX2P48431 NOXO1-201ENST00000354249 1618 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX2P48431 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC18.9■□□□□ 0.62
SOX2P48431 CD72-202ENST00000378430 585 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX2P48431 HES6-204ENST00000409182 863 ntTSL 2 BASIC18.9■□□□□ 0.62
SOX2P48431 RNF146-205ENST00000477776 762 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX2P48431 PRTG-204ENST00000561292 833 ntTSL 3 BASIC18.9■□□□□ 0.62
SOX2P48431 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX2P48431 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC18.9■□□□□ 0.62
SOX2P48431 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX2P48431 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC18.9■□□□□ 0.62
SOX2P48431 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.9■□□□□ 0.62
SOX2P48431 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.62
SOX2P48431 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC18.89■□□□□ 0.62
SOX2P48431 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX2P48431 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX2P48431 Z98882.1-201ENST00000622160 2253 ntBASIC18.89■□□□□ 0.61
SOX2P48431 MED17-221ENST00000639724 2317 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX2P48431 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX2P48431 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC18.89■□□□□ 0.61
SOX2P48431 AF106564.1-201ENST00000607058 2553 ntBASIC18.89■□□□□ 0.61
SOX2P48431 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX2P48431 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC18.89■□□□□ 0.61
SOX2P48431 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC18.89■□□□□ 0.61
SOX2P48431 SLC25A24-204ENST00000569674 2357 ntBASIC18.89■□□□□ 0.61
SOX2P48431 SNAP23-202ENST00000349777 2480 ntTSL 2 BASIC18.89■□□□□ 0.61
SOX2P48431 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC18.89■□□□□ 0.61
SOX2P48431 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.88■□□□□ 0.61
SOX2P48431 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC18.88■□□□□ 0.61
SOX2P48431 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC18.88■□□□□ 0.61
SOX2P48431 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 KRT125P-201ENST00000546827 989 ntBASIC18.88■□□□□ 0.61
SOX2P48431 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC18.88■□□□□ 0.61
SOX2P48431 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC18.88■□□□□ 0.61
SOX2P48431 C17orf82-201ENST00000623772 1530 ntBASIC18.88■□□□□ 0.61
SOX2P48431 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
SOX2P48431 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX2P48431 ZDHHC20-203ENST00000400590 1869 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
SOX2P48431 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX2P48431 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC18.87■□□□□ 0.61
SOX2P48431 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX2P48431 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX2P48431 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC18.87■□□□□ 0.61
SOX2P48431 VGF-203ENST00000611537 1622 ntTSL 5 BASIC18.87■□□□□ 0.61
SOX2P48431 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX2P48431 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX2P48431 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
SOX2P48431 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 DCAF4-202ENST00000358377 2024 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC18.86■□□□□ 0.61
SOX2P48431 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC18.86■□□□□ 0.61
SOX2P48431 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC18.86■□□□□ 0.61
SOX2P48431 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC18.86■□□□□ 0.61
SOX2P48431 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC18.86■□□□□ 0.61
SOX2P48431 EEF1D-204ENST00000423316 2378 ntAPPRIS P4 TSL 5 BASIC18.86■□□□□ 0.61
SOX2P48431 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
SOX2P48431 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SOX2P48431 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SOX2P48431 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 STRADB-201ENST00000194530 2293 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SOX2P48431 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX2P48431 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC18.85■□□□□ 0.61
SOX2P48431 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC18.85■□□□□ 0.61
SOX2P48431 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC18.85■□□□□ 0.61
SOX2P48431 TUB-203ENST00000534099 1759 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX2P48431 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC18.85■□□□□ 0.61
SOX2P48431 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC18.85■□□□□ 0.61
SOX2P48431 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC18.85■□□□□ 0.61
SOX2P48431 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
Retrieved 100 of 98,524 protein–RNA pairs in 21.7 ms