Protein–RNA interactions for Protein: P27658

COL8A1, Collagen alpha-1(VIII) chain, humanhuman

Predictions only

Length 744 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL8A1P27658 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 AP2M1-202ENST00000382456 2091 ntAPPRIS ALT1 TSL 1 (best) BASIC18.88■□□□□ 0.61
COL8A1P27658 PICALM-224ENST00000630913 2261 ntTSL 5 BASIC18.88■□□□□ 0.61
COL8A1P27658 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC18.87■□□□□ 0.61
COL8A1P27658 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL8A1P27658 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC18.87■□□□□ 0.61
COL8A1P27658 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC18.87■□□□□ 0.61
COL8A1P27658 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC18.87■□□□□ 0.61
COL8A1P27658 PXK-203ENST00000383715 1756 ntTSL 5 BASIC18.87■□□□□ 0.61
COL8A1P27658 SLC35B2-201ENST00000393810 1898 ntTSL 2 BASIC18.87■□□□□ 0.61
COL8A1P27658 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC18.87■□□□□ 0.61
COL8A1P27658 GAS7-202ENST00000396115 929 ntTSL 5 BASIC18.87■□□□□ 0.61
COL8A1P27658 AC114730.1-201ENST00000400768 472 ntTSL 4 BASIC18.87■□□□□ 0.61
COL8A1P27658 AC211429.1-201ENST00000415277 523 ntBASIC18.87■□□□□ 0.61
COL8A1P27658 BX276092.2-201ENST00000417668 665 ntBASIC18.87■□□□□ 0.61
COL8A1P27658 UQCRFS1P1-201ENST00000435169 820 ntBASIC18.87■□□□□ 0.61
COL8A1P27658 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC18.87■□□□□ 0.61
COL8A1P27658 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.87■□□□□ 0.61
COL8A1P27658 RHOD-202ENST00000532559 538 ntTSL 3 BASIC18.87■□□□□ 0.61
COL8A1P27658 IGFBP6-203ENST00000548547 1177 ntAPPRIS ALT2 TSL 5 BASIC18.87■□□□□ 0.61
COL8A1P27658 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC18.86■□□□□ 0.61
COL8A1P27658 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 DUSP23-201ENST00000368107 756 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 CBY3-201ENST00000376974 785 ntAPPRIS P1 TSL 2 BASIC18.86■□□□□ 0.61
COL8A1P27658 ZCCHC9-204ENST00000438268 1248 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC18.86■□□□□ 0.61
COL8A1P27658 AC016405.3-201ENST00000607710 860 ntBASIC18.86■□□□□ 0.61
COL8A1P27658 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL8A1P27658 KLC1-203ENST00000347839 2271 ntTSL 5 BASIC18.86■□□□□ 0.61
COL8A1P27658 AC105219.1-201ENST00000531565 1963 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC18.86■□□□□ 0.61
COL8A1P27658 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC18.86■□□□□ 0.61
COL8A1P27658 OXCT2P1-201ENST00000447263 1535 ntBASIC18.85■□□□□ 0.61
COL8A1P27658 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 MME-217ENST00000616757 1315 ntTSL 5 BASIC18.85■□□□□ 0.61
COL8A1P27658 DGCR6L-202ENST00000405465 962 ntTSL 3 BASIC18.85■□□□□ 0.61
COL8A1P27658 LINC01191-201ENST00000412690 844 ntTSL 2 BASIC18.85■□□□□ 0.61
COL8A1P27658 GXYLT1P3-201ENST00000453058 1193 ntBASIC18.85■□□□□ 0.61
COL8A1P27658 AC097658.1-201ENST00000475555 843 ntBASIC18.85■□□□□ 0.61
COL8A1P27658 UBE2K-204ENST00000503368 891 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 KRT18P21-201ENST00000515767 1272 ntBASIC18.85■□□□□ 0.61
COL8A1P27658 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC18.85■□□□□ 0.61
COL8A1P27658 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC18.85■□□□□ 0.61
COL8A1P27658 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 TSPAN13-201ENST00000262067 2093 ntAPPRIS P1 TSL 1 (best) BASIC18.85■□□□□ 0.61
COL8A1P27658 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC18.84■□□□□ 0.61
COL8A1P27658 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 GCC2-AS1-201ENST00000322353 558 ntTSL 2 BASIC18.84■□□□□ 0.61
COL8A1P27658 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 AL360181.5-201ENST00000368554 1044 ntAPPRIS P1 TSL 2 BASIC18.84■□□□□ 0.61
COL8A1P27658 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC18.84■□□□□ 0.61
COL8A1P27658 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC18.84■□□□□ 0.61
COL8A1P27658 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 BET1L-207ENST00000529614 560 ntTSL 5 BASIC18.84■□□□□ 0.61
COL8A1P27658 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC18.84■□□□□ 0.61
COL8A1P27658 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC18.84■□□□□ 0.61
COL8A1P27658 BX649632.1-201ENST00000610187 819 ntTSL 3 BASIC18.84■□□□□ 0.61
COL8A1P27658 AC073912.3-201ENST00000624414 853 ntBASIC18.84■□□□□ 0.61
COL8A1P27658 AC073648.6-201ENST00000641589 218 ntBASIC18.84■□□□□ 0.61
COL8A1P27658 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC18.84■□□□□ 0.61
COL8A1P27658 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC18.84■□□□□ 0.61
COL8A1P27658 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC18.84■□□□□ 0.61
COL8A1P27658 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 MYPOP-201ENST00000322217 1890 ntAPPRIS P1 TSL 1 (best) BASIC18.84■□□□□ 0.61
COL8A1P27658 DACT1-206ENST00000556859 2239 ntAPPRIS ALT2 TSL 2 BASIC18.84■□□□□ 0.61
COL8A1P27658 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC18.83■□□□□ 0.61
COL8A1P27658 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL8A1P27658 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL8A1P27658 TMUB1-205ENST00000482202 899 ntAPPRIS P1 TSL 3 BASIC18.83■□□□□ 0.6
COL8A1P27658 TPT1-AS1-210ENST00000520590 873 ntTSL 5 BASIC18.83■□□□□ 0.6
COL8A1P27658 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL8A1P27658 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC18.83■□□□□ 0.6
COL8A1P27658 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.83■□□□□ 0.6
COL8A1P27658 AC013268.1-206ENST00000638368 961 ntBASIC18.83■□□□□ 0.6
COL8A1P27658 AC112229.1-201ENST00000639295 961 ntBASIC18.83■□□□□ 0.6
COL8A1P27658 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL8A1P27658 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC18.83■□□□□ 0.6
COL8A1P27658 PPM1B-202ENST00000345249 1713 ntTSL 1 (best) BASIC18.83■□□□□ 0.6
COL8A1P27658 DYRK2-203ENST00000393555 2209 ntAPPRIS ALT1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL8A1P27658 PLA2G15-202ENST00000413021 1346 ntTSL 2 BASIC18.82■□□□□ 0.6
COL8A1P27658 DNAJA4-210ENST00000489435 947 ntTSL 3 BASIC18.82■□□□□ 0.6
COL8A1P27658 MYC-209ENST00000641252 345 ntBASIC18.82■□□□□ 0.6
COL8A1P27658 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC18.82■□□□□ 0.6
COL8A1P27658 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL8A1P27658 GABBR2-201ENST00000259455 5788 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL8A1P27658 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC18.82■□□□□ 0.6
COL8A1P27658 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL8A1P27658 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC18.82■□□□□ 0.6
COL8A1P27658 SNX5-201ENST00000377759 2270 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL8A1P27658 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
COL8A1P27658 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC18.81■□□□□ 0.6
Retrieved 100 of 98,524 protein–RNA pairs in 25.7 ms