Protein–RNA interactions for Protein: P09341

CXCL1, Growth-regulated alpha protein, humanhuman

Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL1P09341 PLEKHJ1-204ENST00000586608 935 ntTSL 3 BASIC16.67■□□□□ 0.26
CXCL1P09341 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL1P09341 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC16.67■□□□□ 0.26
CXCL1P09341 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 TAF4-201ENST00000252996 4628 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC16.67■□□□□ 0.26
CXCL1P09341 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC16.67■□□□□ 0.26
CXCL1P09341 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC16.67■□□□□ 0.26
CXCL1P09341 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC16.67■□□□□ 0.26
CXCL1P09341 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 PLK5-201ENST00000334770 2106 ntAPPRIS P2 TSL 2 BASIC16.66■□□□□ 0.26
CXCL1P09341 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 ENDOG-201ENST00000372642 1172 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC16.66■□□□□ 0.26
CXCL1P09341 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.66■□□□□ 0.26
CXCL1P09341 MANF-204ENST00000528157 1153 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 RGS11-204ENST00000397770 2390 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.66■□□□□ 0.26
CXCL1P09341 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 BIN2-210ENST00000615107 2255 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
CXCL1P09341 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC16.66■□□□□ 0.26
CXCL1P09341 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC16.66■□□□□ 0.26
CXCL1P09341 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
CXCL1P09341 AC110285.2-201ENST00000571724 1565 ntTSL 2 BASIC16.65■□□□□ 0.26
CXCL1P09341 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CXCL1P09341 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL1P09341 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CXCL1P09341 WBP1-201ENST00000233615 1294 ntAPPRIS P2 TSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL1P09341 STK32C-205ENST00000456004 607 ntTSL 2 BASIC16.65■□□□□ 0.26
CXCL1P09341 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL1P09341 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.65■□□□□ 0.26
CXCL1P09341 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL1P09341 FBXO41-204ENST00000520530 3293 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
CXCL1P09341 PIK3R1-201ENST00000320694 2625 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
CXCL1P09341 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.64■□□□□ 0.25
CXCL1P09341 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC16.64■□□□□ 0.25
CXCL1P09341 ARHGAP9-202ENST00000393797 2912 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 MOB4-204ENST00000409360 1447 ntTSL 5 BASIC16.64■□□□□ 0.25
CXCL1P09341 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC16.64■□□□□ 0.25
CXCL1P09341 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 TMEM98-202ENST00000394642 1683 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
CXCL1P09341 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 DRD5-201ENST00000304374 2330 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
CXCL1P09341 CMTM3-201ENST00000361909 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
CXCL1P09341 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC16.64■□□□□ 0.25
CXCL1P09341 FGFR2-204ENST00000356226 3547 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 CD82-201ENST00000227155 2289 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 AC008073.3-201ENST00000610442 2281 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CXCL1P09341 MED22-201ENST00000343730 1437 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 HOXB9-201ENST00000311177 2581 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC16.63■□□□□ 0.25
CXCL1P09341 SOCS2-202ENST00000536696 1065 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
CXCL1P09341 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC16.63■□□□□ 0.25
CXCL1P09341 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 AC009831.1-201ENST00000580420 1582 ntBASIC16.63■□□□□ 0.25
CXCL1P09341 RPH3A-203ENST00000543106 2581 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
CXCL1P09341 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 DNAJB5-201ENST00000312316 2391 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
CXCL1P09341 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.62■□□□□ 0.25
CXCL1P09341 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC16.62■□□□□ 0.25
CXCL1P09341 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 ADAM33-203ENST00000379861 3674 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 C19orf66-201ENST00000253110 2117 ntAPPRIS P3 TSL 2 BASIC16.62■□□□□ 0.25
CXCL1P09341 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.62■□□□□ 0.25
CXCL1P09341 CPEB1-AS1-201ENST00000560650 2138 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 ME2-218ENST00000640965 2476 ntTSL 5 BASIC16.62■□□□□ 0.25
CXCL1P09341 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 MTA1-207ENST00000435036 2888 ntTSL 5 BASIC16.62■□□□□ 0.25
CXCL1P09341 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 NOTCH2NL-204ENST00000579793 1954 ntAPPRIS ALT2 TSL 2 BASIC16.62■□□□□ 0.25
CXCL1P09341 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC16.62■□□□□ 0.25
CXCL1P09341 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
CXCL1P09341 TUB-203ENST00000534099 1759 ntTSL 2 BASIC16.61■□□□□ 0.25
CXCL1P09341 SLC12A5-210ENST00000616202 2445 ntTSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL1P09341 HERPUD2-201ENST00000311350 2474 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL1P09341 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC16.61■□□□□ 0.25
CXCL1P09341 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC16.61■□□□□ 0.25
CXCL1P09341 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC16.61■□□□□ 0.25
CXCL1P09341 EI24-204ENST00000527235 1625 ntTSL 5 BASIC16.61■□□□□ 0.25
CXCL1P09341 HOMER3-205ENST00000542541 1607 ntAPPRIS P3 TSL 1 (best) BASIC16.61■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms