Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC4P09017 HRASLS5-201ENST00000301790 1166 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC4P09017 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC4P09017 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC21.14■□□□□ 0.97
HOXC4P09017 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC21.14■□□□□ 0.97
HOXC4P09017 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.14■□□□□ 0.97
HOXC4P09017 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC4P09017 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC4P09017 SLC39A14-202ENST00000289952 2137 ntAPPRIS ALT2 TSL 2 BASIC21.14■□□□□ 0.97
HOXC4P09017 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
HOXC4P09017 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 ASF1B-201ENST00000263382 2059 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC4P09017 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HOXC4P09017 SPRTN-201ENST00000008440 1667 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC4P09017 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 SOCS1-201ENST00000332029 1225 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
HOXC4P09017 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 AC090192.1-201ENST00000517740 490 ntBASIC21.13■□□□□ 0.97
HOXC4P09017 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.13■□□□□ 0.97
HOXC4P09017 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 AC104187.1-201ENST00000607510 612 ntBASIC21.13■□□□□ 0.97
HOXC4P09017 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.13■□□□□ 0.97
HOXC4P09017 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
HOXC4P09017 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC21.12■□□□□ 0.97
HOXC4P09017 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC21.12■□□□□ 0.97
HOXC4P09017 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 ANTXR2-202ENST00000346652 1343 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.12■□□□□ 0.97
HOXC4P09017 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 RASGRP2-209ENST00000394429 453 ntTSL 3 BASIC21.12■□□□□ 0.97
HOXC4P09017 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC21.12■□□□□ 0.97
HOXC4P09017 CALM1-202ENST00000447653 1104 ntAPPRIS ALT1 TSL 2 BASIC21.12■□□□□ 0.97
HOXC4P09017 SEC11A-208ENST00000559729 1256 ntTSL 2 BASIC21.12■□□□□ 0.97
HOXC4P09017 RNASEH2B-206ENST00000611510 1257 ntTSL 5 BASIC21.12■□□□□ 0.97
HOXC4P09017 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 AC127496.7-201ENST00000625110 1798 ntBASIC21.12■□□□□ 0.97
HOXC4P09017 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
HOXC4P09017 IFNGR2-203ENST00000405436 1684 ntTSL 5 BASIC21.12■□□□□ 0.97
HOXC4P09017 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 IZUMO4-203ENST00000395307 944 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
HOXC4P09017 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC21.11■□□□□ 0.97
HOXC4P09017 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.11■□□□□ 0.97
HOXC4P09017 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.1■□□□□ 0.97
HOXC4P09017 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.1■□□□□ 0.97
HOXC4P09017 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.1■□□□□ 0.97
HOXC4P09017 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 AC080038.1-201ENST00000611274 1154 ntBASIC21.1■□□□□ 0.97
HOXC4P09017 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.1■□□□□ 0.97
HOXC4P09017 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC21.1■□□□□ 0.97
HOXC4P09017 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HOXC4P09017 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC21.1■□□□□ 0.97
HOXC4P09017 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC21.09■□□□□ 0.97
HOXC4P09017 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.09■□□□□ 0.97
HOXC4P09017 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HOXC4P09017 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC21.09■□□□□ 0.97
HOXC4P09017 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 EEF1DP3-203ENST00000566025 782 ntBASIC21.09■□□□□ 0.97
HOXC4P09017 AC138907.5-202ENST00000569484 235 ntBASIC21.09■□□□□ 0.97
HOXC4P09017 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC21.09■□□□□ 0.97
HOXC4P09017 AP001160.3-201ENST00000601484 763 ntBASIC21.09■□□□□ 0.97
HOXC4P09017 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 BID-214ENST00000617586 542 ntTSL 5 BASIC21.09■□□□□ 0.97
HOXC4P09017 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC21.09■□□□□ 0.97
HOXC4P09017 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.09■□□□□ 0.97
HOXC4P09017 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HOXC4P09017 GIT1-210ENST00000579937 2798 ntTSL 2 BASIC21.08■□□□□ 0.97
HOXC4P09017 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.08■□□□□ 0.97
HOXC4P09017 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.08■□□□□ 0.97
HOXC4P09017 C18orf65-201ENST00000622985 2076 ntTSL 2 BASIC21.08■□□□□ 0.97
HOXC4P09017 EFNA2-201ENST00000215368 949 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC4P09017 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC4P09017 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HOXC4P09017 HYAL2-207ENST00000442581 2318 ntAPPRIS P1 TSL 2 BASIC21.08■□□□□ 0.97
HOXC4P09017 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC21.08■□□□□ 0.97
HOXC4P09017 ZPBP-201ENST00000046087 1213 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
HOXC4P09017 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.08■□□□□ 0.97
HOXC4P09017 KRT18P20-201ENST00000548986 1279 ntBASIC21.08■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 61.4 ms