Protein–RNA interactions for Protein: H3BMG3

SMKR1, Small lysine-rich protein 1, humanhuman

Predictions only

Length 65 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMKR1H3BMG3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 MYH14-206ENST00000596571 5988 ntAPPRIS ALT2 TSL 5 BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 DHRS11-215ENST00000618403 1598 ntAPPRIS P1 TSL 1 (best) BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC15.7■□□□□ 0.1
SMKR1H3BMG3 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 CDKN2C-203ENST00000396148 2086 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 LRR1-201ENST00000298288 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 LINC01529-204ENST00000636474 1715 ntBASIC15.69■□□□□ 0.1
SMKR1H3BMG3 C1orf198-201ENST00000366663 3858 ntAPPRIS P3 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 TAF6L-201ENST00000294168 2116 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 AC009531.1-201ENST00000442323 580 ntTSL 4 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 COMMD5-201ENST00000305103 1373 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 VEGFA-204ENST00000372064 2909 ntTSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC15.69■□□□□ 0.1
SMKR1H3BMG3 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 NKX6-3-201ENST00000518699 1352 ntAPPRIS P1 TSL 5 BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 CNPY3-202ENST00000394142 954 ntTSL 5 BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 HYI-213ENST00000583037 1322 ntTSL 5 BASIC15.68■□□□□ 0.1
SMKR1H3BMG3 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 PGAM5-203ENST00000498926 2834 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 FBXO31-201ENST00000311635 5934 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 TBC1D2B-202ENST00000409931 6086 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 C20orf24-201ENST00000342422 896 ntTSL 2 BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 C20orf24-202ENST00000344795 1114 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 C17orf49-201ENST00000439424 850 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 MAP4K4-210ENST00000425019 4403 ntTSL 5 BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
SMKR1H3BMG3 PPP1R12B-212ENST00000480184 1808 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 PRICKLE3-206ENST00000599218 2062 ntAPPRIS P3 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 REST-206ENST00000612429 1376 ntTSL 5 BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 REST-207ENST00000616975 1370 ntTSL 5 BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 REST-212ENST00000640343 1352 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 AC022616.5-201ENST00000518796 181 ntBASIC15.66■□□□□ 0.1
SMKR1H3BMG3 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
SMKR1H3BMG3 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 MEDAG-201ENST00000380482 2374 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 SMIM11B-205ENST00000624304 1863 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 KCTD13-202ENST00000561540 1773 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 FAM222B-205ENST00000577682 549 ntTSL 4 BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 MIR4281-201ENST00000580852 62 ntBASIC15.65■□□□□ 0.1
SMKR1H3BMG3 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
SMKR1H3BMG3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.6 ms