Protein–RNA interactions for Protein: A0A087WT01

TRAV27, T-cell receptor alpha variable 27 (Fragment), humanhuman

Predictions only

Length 109 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV27A0A087WT01 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV27A0A087WT01 SRR-208ENST00000576848 588 ntTSL 4 BASIC19.52■□□□□ 0.72
TRAV27A0A087WT01 DUSP26-201ENST00000256261 1835 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV27A0A087WT01 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV27A0A087WT01 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV27A0A087WT01 DRD2-202ENST00000362072 2789 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
TRAV27A0A087WT01 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV27A0A087WT01 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV27A0A087WT01 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.71
TRAV27A0A087WT01 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
TRAV27A0A087WT01 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 IMPA2-201ENST00000269159 1534 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 CTAG1B-202ENST00000359887 998 ntTSL 2 BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 GOLGA2P6-201ENST00000340929 2049 ntBASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 TMEM51-203ENST00000400796 1842 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
TRAV27A0A087WT01 PPP3CC-201ENST00000240139 2189 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 KIF12-207ENST00000640217 2194 ntAPPRIS P5 TSL 5 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 AC244015.2-201ENST00000616358 1861 ntBASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 RBM38-205ENST00000440234 686 ntTSL 2 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 OR2I1P-207ENST00000453522 948 ntBASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 TRIR-202ENST00000588213 841 ntTSL 3 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 AC092171.4-201ENST00000609130 632 ntBASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 MMP28-203ENST00000612672 1092 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 HOXA11-AS1_1.1-201ENST00000613939 98 ntBASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 SHISA9-205ENST00000639941 1135 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 NRXN2-203ENST00000377551 6373 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 SLC35A3-210ENST00000638371 2298 ntTSL 5 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
TRAV27A0A087WT01 AC026471.6-201ENST00000622954 1905 ntBASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 PLEKHF1-204ENST00000592810 1357 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 MOSPD3-204ENST00000424091 1115 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 AC010525.1-201ENST00000585559 441 ntBASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 OR7E47P-201ENST00000546390 1422 ntBASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC19.49■□□□□ 0.71
TRAV27A0A087WT01 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 PTCHD3P2-201ENST00000424937 1205 ntBASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 RPP21-222ENST00000433076 577 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 AC009506.1-201ENST00000418474 1494 ntTSL 2 BASIC19.48■□□□□ 0.71
TRAV27A0A087WT01 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 SSR2-210ENST00000480567 895 ntAPPRIS P1 TSL 2 BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 MIR4466-201ENST00000606121 54 ntBASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC19.47■□□□□ 0.71
TRAV27A0A087WT01 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 SUMF1-205ENST00000458465 1102 ntTSL 2 BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 AC068587.7-201ENST00000641602 218 ntBASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 AC005229.4-201ENST00000610085 2198 ntBASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 OAF-201ENST00000328965 2525 ntAPPRIS P2 TSL 1 (best) BASIC19.46■□□□□ 0.71
TRAV27A0A087WT01 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 SERBP1P1-201ENST00000396021 1160 ntBASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 GPSM1-201ENST00000291775 2114 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
TRAV27A0A087WT01 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC19.44■□□□□ 0.7
TRAV27A0A087WT01 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC19.44■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 150.5 ms