Protein–RNA interactions for Protein: R4GMX3

COMMD3-BMI1, COMMD3-BMI1 readthrough, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3-BMI1R4GMX3 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 BHLHE23-202ENST00000612929 1109 ntBASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 HOXC6-202ENST00000394331 2943 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 SPNS2-201ENST00000329078 3447 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 PFKFB4-204ENST00000416568 1575 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COMMD3-BMI1R4GMX3 SPOCK3-204ENST00000502330 2180 ntAPPRIS ALT2 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 EIF2B4-211ENST00000616081 1754 ntTSL 5 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 ESR2-212ENST00000556275 2695 ntTSL 2 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 IDNK-201ENST00000376417 511 ntTSL 5 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 STK32C-205ENST00000456004 607 ntTSL 2 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 ING1-201ENST00000333219 5119 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 EGFL8-220ENST00000395512 1312 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 ZNF773-204ENST00000598770 2019 ntAPPRIS ALT2 TSL 2 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC20.19■□□□□ 0.82
COMMD3-BMI1R4GMX3 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 AC120024.1-201ENST00000562672 995 ntBASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 SSX2IP-209ENST00000603677 1149 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 SNX5-219ENST00000606602 885 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 ZNF668-207ENST00000535577 2396 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 YIPF2-201ENST00000253031 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COMMD3-BMI1R4GMX3 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 TDRP-203ENST00000523656 2622 ntTSL 5 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC20.17■□□□□ 0.82
COMMD3-BMI1R4GMX3 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 CDCA5-202ENST00000404147 1012 ntTSL 2 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 PVT1_1.1-201ENST00000615125 194 ntBASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 AC074183.2-201ENST00000623112 922 ntBASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 AC016065.1-201ENST00000500118 2413 ntTSL 2 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 CCDC92-209ENST00000545891 1790 ntAPPRIS P1 TSL 2 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.16■□□□□ 0.82
COMMD3-BMI1R4GMX3 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 AL034417.2-201ENST00000445300 2044 ntTSL 2 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 PAX1-201ENST00000398485 2838 ntAPPRIS P3 TSL 5 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 CCSAP-203ENST00000366687 5089 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 TSPY13P-201ENST00000338964 914 ntBASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 BEX3-202ENST00000372634 753 ntTSL 2 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 GJD4-201ENST00000321660 1580 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 DOC2A-201ENST00000350119 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.15■□□□□ 0.82
COMMD3-BMI1R4GMX3 ANKLE1-204ENST00000594072 2294 ntTSL 5 BASIC20.15■□□□□ 0.82
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms