Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
PIF1Q9H611 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC20.56■□□□□ 0.88
PIF1Q9H611 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC20.56■□□□□ 0.88
PIF1Q9H611 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC20.56■□□□□ 0.88
PIF1Q9H611 RNF146-205ENST00000477776 762 ntTSL 3 BASIC20.56■□□□□ 0.88
PIF1Q9H611 AC009299.2-201ENST00000482477 511 ntBASIC20.56■□□□□ 0.88
PIF1Q9H611 PRR7-204ENST00000510492 1285 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PIF1Q9H611 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.56■□□□□ 0.88
PIF1Q9H611 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
PIF1Q9H611 MED17-221ENST00000639724 2317 ntTSL 5 BASIC20.56■□□□□ 0.88
PIF1Q9H611 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
PIF1Q9H611 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC20.56■□□□□ 0.88
PIF1Q9H611 GNS-207ENST00000542058 2020 ntAPPRIS ALT2 TSL 2 BASIC20.56■□□□□ 0.88
PIF1Q9H611 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PIF1Q9H611 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
PIF1Q9H611 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PIF1Q9H611 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC20.55■□□□□ 0.88
PIF1Q9H611 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC20.55■□□□□ 0.88
PIF1Q9H611 LRIG1-201ENST00000273261 5273 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
PIF1Q9H611 CBWD2-203ENST00000416503 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 NABP2-203ENST00000380198 1775 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC20.54■□□□□ 0.88
PIF1Q9H611 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC20.54■□□□□ 0.88
PIF1Q9H611 SPAST-204ENST00000621856 1715 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 GUCD1-202ENST00000402766 865 ntTSL 2 BASIC20.54■□□□□ 0.88
PIF1Q9H611 EPDR1-202ENST00000423717 638 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 AF106564.1-201ENST00000607058 2553 ntBASIC20.54■□□□□ 0.88
PIF1Q9H611 GFRA3-201ENST00000274721 2039 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 OLFM1-204ENST00000371793 2444 ntAPPRIS P1 TSL 3 BASIC20.54■□□□□ 0.88
PIF1Q9H611 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.54■□□□□ 0.88
PIF1Q9H611 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PIF1Q9H611 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PIF1Q9H611 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.53■□□□□ 0.88
PIF1Q9H611 KCNH2-201ENST00000262186 4286 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PIF1Q9H611 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC20.53■□□□□ 0.88
PIF1Q9H611 UBE2Q1-201ENST00000292211 3210 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PIF1Q9H611 KRT125P-201ENST00000546827 989 ntBASIC20.53■□□□□ 0.88
PIF1Q9H611 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC20.53■□□□□ 0.88
PIF1Q9H611 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.53■□□□□ 0.88
PIF1Q9H611 AC009102.2-201ENST00000606772 1639 ntBASIC20.53■□□□□ 0.88
PIF1Q9H611 AC244015.2-201ENST00000616358 1861 ntBASIC20.52■□□□□ 0.88
PIF1Q9H611 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.52■□□□□ 0.88
PIF1Q9H611 RPL31-208ENST00000409733 825 ntAPPRIS P3 TSL 1 (best) BASIC20.52■□□□□ 0.88
PIF1Q9H611 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PIF1Q9H611 AC026785.2-201ENST00000511821 867 ntTSL 2 BASIC20.52■□□□□ 0.88
PIF1Q9H611 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PIF1Q9H611 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC20.52■□□□□ 0.88
PIF1Q9H611 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC20.52■□□□□ 0.88
PIF1Q9H611 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.52■□□□□ 0.88
PIF1Q9H611 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC20.52■□□□□ 0.88
PIF1Q9H611 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC20.52■□□□□ 0.87
PIF1Q9H611 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC20.52■□□□□ 0.87
PIF1Q9H611 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.52■□□□□ 0.87
PIF1Q9H611 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PIF1Q9H611 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PIF1Q9H611 ZFAND5-202ENST00000343431 1073 ntAPPRIS P1 TSL 5 BASIC20.51■□□□□ 0.87
PIF1Q9H611 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC20.51■□□□□ 0.87
PIF1Q9H611 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC20.51■□□□□ 0.87
PIF1Q9H611 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC20.51■□□□□ 0.87
PIF1Q9H611 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.51■□□□□ 0.87
PIF1Q9H611 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC20.5■□□□□ 0.87
PIF1Q9H611 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC20.5■□□□□ 0.87
PIF1Q9H611 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.5■□□□□ 0.87
PIF1Q9H611 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.5■□□□□ 0.87
PIF1Q9H611 TMEFF1-201ENST00000374879 2611 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.5■□□□□ 0.87
PIF1Q9H611 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PIF1Q9H611 EED-201ENST00000263360 2223 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PIF1Q9H611 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC20.49■□□□□ 0.87
PIF1Q9H611 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC20.49■□□□□ 0.87
PIF1Q9H611 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC20.49■□□□□ 0.87
PIF1Q9H611 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.49■□□□□ 0.87
PIF1Q9H611 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC20.49■□□□□ 0.87
PIF1Q9H611 SMUG1-203ENST00000401977 1082 ntAPPRIS P1 TSL 5 BASIC20.49■□□□□ 0.87
PIF1Q9H611 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.49■□□□□ 0.87
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms