Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 AL161421.1-201ENST00000619666 1101 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 ANOS2P-203ENST00000472227 1816 ntBASIC21.75■■□□□ 1.07
HMGB4Q8WW32 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
HMGB4Q8WW32 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 AC007322.1-201ENST00000426983 750 ntBASIC21.74■■□□□ 1.07
HMGB4Q8WW32 ARF3-202ENST00000447318 1089 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 HAGH-203ENST00000455446 1276 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 AL731577.2-201ENST00000508096 555 ntTSL 2 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 AP001160.3-201ENST00000601484 763 ntBASIC21.74■■□□□ 1.07
HMGB4Q8WW32 AL121832.2-201ENST00000610979 668 ntBASIC21.74■■□□□ 1.07
HMGB4Q8WW32 AL050303.2-201ENST00000619798 666 ntBASIC21.74■■□□□ 1.07
HMGB4Q8WW32 AC231657.2-201ENST00000624556 255 ntBASIC21.74■■□□□ 1.07
HMGB4Q8WW32 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC21.74■■□□□ 1.07
HMGB4Q8WW32 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 APTR-205ENST00000447009 902 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 DUX4L16-201ENST00000555130 1264 ntBASIC21.73■■□□□ 1.07
HMGB4Q8WW32 LITAF-205ENST00000570904 1118 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 AC005789.1-201ENST00000585411 297 ntTSL 3 BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.73■■□□□ 1.07
HMGB4Q8WW32 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 HMGA2-206ENST00000536545 1788 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 GET4-201ENST00000265857 2090 ntAPPRIS P2 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 DUSP8P5-201ENST00000422884 1815 ntBASIC21.72■■□□□ 1.07
HMGB4Q8WW32 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 AC083906.2-201ENST00000511578 360 ntBASIC21.72■■□□□ 1.07
HMGB4Q8WW32 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 AC005181.1-201ENST00000604782 1256 ntBASIC21.72■■□□□ 1.07
HMGB4Q8WW32 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC21.72■■□□□ 1.07
HMGB4Q8WW32 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 FAM57A-202ENST00000308278 2412 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 TMPO-201ENST00000261210 820 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 GAMT-205ENST00000640762 751 ntTSL 5 BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 MYCNOS-205ENST00000641950 531 ntBASIC21.71■■□□□ 1.07
HMGB4Q8WW32 B3GALNT2-202ENST00000366600 2015 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 PINK1-201ENST00000321556 2660 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
HMGB4Q8WW32 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.7■■□□□ 1.07
HMGB4Q8WW32 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 SERP1-208ENST00000491660 830 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 CD99P1-205ENST00000527459 561 ntBASIC21.7■■□□□ 1.06
HMGB4Q8WW32 BRI3-207ENST00000539286 699 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 HERC2P5-204ENST00000569697 1214 ntTSL 2 BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC21.7■■□□□ 1.06
HMGB4Q8WW32 LINC01960-201ENST00000563759 1884 ntBASIC21.7■■□□□ 1.06
HMGB4Q8WW32 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 NAGS-201ENST00000293404 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 ZC3H14-202ENST00000302216 2560 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 GATS-205ENST00000436886 2726 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.69■■□□□ 1.06
HMGB4Q8WW32 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 RCC2-201ENST00000375433 2030 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 TSPY6P-201ENST00000448518 926 ntBASIC21.68■■□□□ 1.06
HMGB4Q8WW32 AC079089.2-201ENST00000531211 1277 ntBASIC21.68■■□□□ 1.06
HMGB4Q8WW32 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 AC055733.4-201ENST00000638462 1354 ntBASIC21.68■■□□□ 1.06
HMGB4Q8WW32 AC074212.1-201ENST00000559756 1402 ntTSL 3 BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 CCDC47-204ENST00000582252 1719 ntTSL 2 BASIC21.68■■□□□ 1.06
HMGB4Q8WW32 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms