Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 CAPN10-202ENST00000270364 1267 ntTSL 2 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 POLR2J-202ENST00000393794 784 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 POU5F1P3-201ENST00000428824 1078 ntBASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 AC008443.6-201ENST00000512508 500 ntTSL 4 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 FAM71E1-204ENST00000600100 1281 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 SKOR2-203ENST00000620245 3048 ntAPPRIS ALT2 TSL 5 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 PRMT5-213ENST00000553897 1857 ntTSL 2 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.28■■□□□ 1.16
SLC44A3Q8N4M1 AC055733.4-201ENST00000638462 1354 ntBASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 DNAH9-209ENST00000579828 1986 ntTSL 2 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 CYP2A13-201ENST00000330436 1739 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 KHDRBS1-204ENST00000492989 1215 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 DHRS4-207ENST00000559632 1003 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 HOXA4-204ENST00000610970 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 H19-210ENST00000439725 1929 ntTSL 2 BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
SLC44A3Q8N4M1 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC22.27■■□□□ 1.15
SLC44A3Q8N4M1 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC22.27■■□□□ 1.15
SLC44A3Q8N4M1 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 ACSS1-203ENST00000432802 2438 ntTSL 2 BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 KRT18P20-201ENST00000548986 1279 ntBASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
SLC44A3Q8N4M1 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 MIR4758-201ENST00000577688 71 ntBASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 TNNI3-207ENST00000588882 669 ntTSL 2 BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 PRMT1-221ENST00000610806 1192 ntTSL 3 BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 ITM2C-210ENST00000620962 501 ntBASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 C12orf42-208ENST00000548883 1336 ntAPPRIS P2 TSL 1 (best) BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 RWDD4-206ENST00000512740 1393 ntTSL 5 BASIC22.25■■□□□ 1.15
SLC44A3Q8N4M1 EFCAB6-202ENST00000356087 1129 ntTSL 5 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 AC010141.2-201ENST00000452426 721 ntBASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 AC110285.4-201ENST00000572590 424 ntTSL 3 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC22.24■■□□□ 1.15
SLC44A3Q8N4M1 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 AC004812.2-201ENST00000611079 2094 ntBASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 DUSP8P5-201ENST00000422884 1815 ntBASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 KRT18P29-201ENST00000397031 1267 ntBASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 RAMP1-202ENST00000403885 650 ntTSL 3 BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 AC138907.5-202ENST00000569484 235 ntBASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC22.23■■□□□ 1.15
SLC44A3Q8N4M1 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 HAS1-205ENST00000601714 2086 ntTSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 HOMER2-201ENST00000304231 1990 ntAPPRIS P4 TSL 5 BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 MED10-201ENST00000255764 1141 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 LINC02531-201ENST00000404689 593 ntTSL 5 BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 PPP1R14C-201ENST00000361131 2152 ntAPPRIS P1 TSL 1 (best) BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 AL139125.2-201ENST00000623134 1869 ntBASIC22.22■■□□□ 1.15
SLC44A3Q8N4M1 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 AC090377.1-201ENST00000585691 1762 ntTSL 3 BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 RNA5SP413-201ENST00000516373 109 ntBASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 RIMKLB-205ENST00000535829 2236 ntAPPRIS P1 TSL 2 BASIC22.21■■□□□ 1.15
SLC44A3Q8N4M1 TMED4-205ENST00000481238 1755 ntTSL 1 (best) BASIC22.2■■□□□ 1.14
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms