Protein–RNA interactions for Protein: Q86UV5

USP48, Ubiquitin carboxyl-terminal hydrolase 48, humanhuman

Predictions only

Length 1,035 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP48Q86UV5 FP325331.1-202ENST00000623531 1380 ntBASIC26.5■■□□□ 1.83
USP48Q86UV5 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC26.5■■□□□ 1.83
USP48Q86UV5 MIR663A-201ENST00000385250 93 ntBASIC26.5■■□□□ 1.83
USP48Q86UV5 GPX1P1-201ENST00000388829 606 ntBASIC26.5■■□□□ 1.83
USP48Q86UV5 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC26.5■■□□□ 1.83
USP48Q86UV5 CAPN12-212ENST00000601953 2381 ntTSL 5 BASIC26.5■■□□□ 1.83
USP48Q86UV5 NAAA-204ENST00000507187 1750 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
USP48Q86UV5 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC26.5■■□□□ 1.83
USP48Q86UV5 HOXA10-201ENST00000283921 2541 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP48Q86UV5 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP48Q86UV5 STX4-202ENST00000394998 1498 ntTSL 2 BASIC26.49■■□□□ 1.83
USP48Q86UV5 ANOS2P-203ENST00000472227 1816 ntBASIC26.49■■□□□ 1.83
USP48Q86UV5 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP48Q86UV5 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC26.49■■□□□ 1.83
USP48Q86UV5 METTL26-203ENST00000397664 604 ntTSL 2 BASIC26.49■■□□□ 1.83
USP48Q86UV5 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP48Q86UV5 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC26.49■■□□□ 1.83
USP48Q86UV5 KLK9-202ENST00000594211 754 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP48Q86UV5 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.49■■□□□ 1.83
USP48Q86UV5 AL117328.2-201ENST00000624617 1940 ntBASIC26.49■■□□□ 1.83
USP48Q86UV5 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC26.49■■□□□ 1.83
USP48Q86UV5 NEK6-214ENST00000545174 2573 ntAPPRIS P1 TSL 1 (best) BASIC26.49■■□□□ 1.83
USP48Q86UV5 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP48Q86UV5 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP48Q86UV5 ZNF668-205ENST00000426488 2282 ntTSL 5 BASIC26.48■■□□□ 1.83
USP48Q86UV5 KRT19P1-201ENST00000405746 1186 ntBASIC26.48■■□□□ 1.83
USP48Q86UV5 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP48Q86UV5 APTR-205ENST00000447009 902 ntTSL 2 BASIC26.48■■□□□ 1.83
USP48Q86UV5 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC26.48■■□□□ 1.83
USP48Q86UV5 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC26.48■■□□□ 1.83
USP48Q86UV5 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.48■■□□□ 1.83
USP48Q86UV5 WT1-210ENST00000639563 1494 ntAPPRIS ALT2 TSL 1 (best) BASIC26.48■■□□□ 1.83
USP48Q86UV5 SPAG7-205ENST00000573366 1668 ntTSL 3 BASIC26.47■■□□□ 1.83
USP48Q86UV5 SLC25A39-201ENST00000225308 1607 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP48Q86UV5 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP48Q86UV5 UBE2C-203ENST00000352551 665 ntTSL 2 BASIC26.47■■□□□ 1.83
USP48Q86UV5 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP48Q86UV5 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC26.47■■□□□ 1.83
USP48Q86UV5 B3GALT6-201ENST00000379198 2777 ntAPPRIS P1 BASIC26.47■■□□□ 1.83
USP48Q86UV5 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC26.47■■□□□ 1.83
USP48Q86UV5 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP48Q86UV5 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP48Q86UV5 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC26.47■■□□□ 1.83
USP48Q86UV5 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC26.47■■□□□ 1.83
USP48Q86UV5 TANGO2-201ENST00000327374 2273 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP48Q86UV5 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC26.46■■□□□ 1.83
USP48Q86UV5 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP48Q86UV5 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USP48Q86UV5 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP48Q86UV5 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC26.46■■□□□ 1.83
USP48Q86UV5 JDP2-202ENST00000419727 972 ntAPPRIS P1 TSL 2 BASIC26.46■■□□□ 1.83
USP48Q86UV5 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC26.46■■□□□ 1.83
USP48Q86UV5 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC26.46■■□□□ 1.83
USP48Q86UV5 TARDBP-228ENST00000629725 1031 ntTSL 5 BASIC26.46■■□□□ 1.83
USP48Q86UV5 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
USP48Q86UV5 CLDN5-201ENST00000403084 2357 ntBASIC26.46■■□□□ 1.83
USP48Q86UV5 TMEM185B-201ENST00000426077 2131 ntAPPRIS P1 BASIC26.45■■□□□ 1.83
USP48Q86UV5 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
USP48Q86UV5 C8orf82-202ENST00000524821 2476 ntAPPRIS P2 TSL 1 (best) BASIC26.45■■□□□ 1.83
USP48Q86UV5 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.83
USP48Q86UV5 HNRNPD-202ENST00000352301 1667 ntAPPRIS ALT1 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP48Q86UV5 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC26.45■■□□□ 1.82
USP48Q86UV5 LIN7B-201ENST00000221459 755 ntAPPRIS P1 TSL 1 (best) BASIC26.45■■□□□ 1.82
USP48Q86UV5 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
USP48Q86UV5 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC26.45■■□□□ 1.82
USP48Q86UV5 ZNF717-203ENST00000477374 1169 ntTSL 2 BASIC26.45■■□□□ 1.82
USP48Q86UV5 SPI1-203ENST00000533030 661 ntTSL 2 BASIC26.45■■□□□ 1.82
USP48Q86UV5 AC092143.4-201ENST00000570217 559 ntTSL 4 BASIC26.45■■□□□ 1.82
USP48Q86UV5 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC26.45■■□□□ 1.82
USP48Q86UV5 GAMT-205ENST00000640762 751 ntTSL 5 BASIC26.45■■□□□ 1.82
USP48Q86UV5 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC26.44■■□□□ 1.82
USP48Q86UV5 C10orf95-201ENST00000625129 1469 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 AC233723.2-201ENST00000623798 2106 ntBASIC26.44■■□□□ 1.82
USP48Q86UV5 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 HAGH-201ENST00000397353 1257 ntAPPRIS ALT1 TSL 5 BASIC26.44■■□□□ 1.82
USP48Q86UV5 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC26.44■■□□□ 1.82
USP48Q86UV5 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC26.44■■□□□ 1.82
USP48Q86UV5 C5orf49-201ENST00000399810 2385 ntAPPRIS P2 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP48Q86UV5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
USP48Q86UV5 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC26.43■■□□□ 1.82
USP48Q86UV5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC26.43■■□□□ 1.82
USP48Q86UV5 C6orf201-202ENST00000380175 1834 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.82
USP48Q86UV5 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.43■■□□□ 1.82
USP48Q86UV5 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC26.42■■□□□ 1.82
USP48Q86UV5 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP48Q86UV5 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP48Q86UV5 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC26.42■■□□□ 1.82
USP48Q86UV5 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC26.42■■□□□ 1.82
USP48Q86UV5 AC027307.1-201ENST00000590252 457 ntTSL 5 BASIC26.42■■□□□ 1.82
USP48Q86UV5 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC26.42■■□□□ 1.82
USP48Q86UV5 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC26.42■■□□□ 1.82
USP48Q86UV5 EP400NL-214ENST00000641289 2402 ntBASIC26.41■■□□□ 1.82
USP48Q86UV5 MAPK12-211ENST00000622558 1779 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP48Q86UV5 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC26.41■■□□□ 1.82
USP48Q86UV5 BX005040.4-201ENST00000637145 1518 ntBASIC26.41■■□□□ 1.82
USP48Q86UV5 STMN4-204ENST00000519997 1623 ntTSL 2 BASIC26.41■■□□□ 1.82
Retrieved 100 of 98,524 protein–RNA pairs in 22 ms