Protein–RNA interactions for Protein: Q6A162

KRT40, Keratin, type I cytoskeletal 40, humanhuman

Predictions only

Length 431 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
KRT40Q6A162 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
KRT40Q6A162 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.6
KRT40Q6A162 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 SMG7-AS1-201ENST00000421703 2220 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 AC079089.2-201ENST00000531211 1277 ntBASIC25.07■■□□□ 1.6
KRT40Q6A162 MIR4767-201ENST00000582827 78 ntBASIC25.07■■□□□ 1.6
KRT40Q6A162 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC25.07■■□□□ 1.6
KRT40Q6A162 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
KRT40Q6A162 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC25.07■■□□□ 1.6
KRT40Q6A162 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC25.06■■□□□ 1.6
KRT40Q6A162 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
KRT40Q6A162 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
KRT40Q6A162 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 MRGPRF-203ENST00000441623 2282 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC25.06■■□□□ 1.6
KRT40Q6A162 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC25.06■■□□□ 1.6
KRT40Q6A162 POLR3GL-201ENST00000369313 818 ntTSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 FIZ1-205ENST00000592585 489 ntTSL 5 BASIC25.06■■□□□ 1.6
KRT40Q6A162 ELL3-201ENST00000319359 2352 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
KRT40Q6A162 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 ZBTB22-208ENST00000431845 2651 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
KRT40Q6A162 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC25.06■■□□□ 1.6
KRT40Q6A162 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
KRT40Q6A162 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC25.05■■□□□ 1.6
KRT40Q6A162 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
KRT40Q6A162 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
KRT40Q6A162 AC090192.1-201ENST00000517740 490 ntBASIC25.05■■□□□ 1.6
KRT40Q6A162 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC25.05■■□□□ 1.6
KRT40Q6A162 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC25.05■■□□□ 1.6
KRT40Q6A162 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
KRT40Q6A162 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC25.05■■□□□ 1.6
KRT40Q6A162 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
KRT40Q6A162 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
KRT40Q6A162 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
KRT40Q6A162 MAG-206ENST00000597035 542 ntTSL 4 BASIC25.04■■□□□ 1.6
KRT40Q6A162 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC25.04■■□□□ 1.6
KRT40Q6A162 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
KRT40Q6A162 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
KRT40Q6A162 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
KRT40Q6A162 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
KRT40Q6A162 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC25.04■■□□□ 1.6
KRT40Q6A162 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
KRT40Q6A162 ZNF843-201ENST00000315678 2137 ntAPPRIS P2 TSL 2 BASIC25.03■■□□□ 1.6
KRT40Q6A162 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
KRT40Q6A162 AC010141.3-201ENST00000456659 717 ntBASIC25.03■■□□□ 1.6
KRT40Q6A162 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
KRT40Q6A162 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
KRT40Q6A162 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
KRT40Q6A162 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
KRT40Q6A162 SELENOO-201ENST00000380903 2315 ntAPPRIS P2 TSL 1 (best) BASIC25.02■■□□□ 1.6
KRT40Q6A162 SELENOO-203ENST00000611222 2311 ntAPPRIS ALT2 TSL 5 BASIC25.02■■□□□ 1.6
KRT40Q6A162 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC25.02■■□□□ 1.6
KRT40Q6A162 SLC29A1-207ENST00000393841 2485 ntAPPRIS P1 TSL 2 BASIC25.02■■□□□ 1.6
KRT40Q6A162 PRSS22-203ENST00000571228 1037 ntTSL 2 BASIC25.02■■□□□ 1.6
KRT40Q6A162 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC25.02■■□□□ 1.6
KRT40Q6A162 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
KRT40Q6A162 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC25.02■■□□□ 1.6
KRT40Q6A162 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
KRT40Q6A162 AC092384.1-201ENST00000378347 1812 ntTSL 2 BASIC25.02■■□□□ 1.6
KRT40Q6A162 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC25.02■■□□□ 1.6
KRT40Q6A162 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.6
KRT40Q6A162 ST3GAL4-215ENST00000532243 1825 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
KRT40Q6A162 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC25.01■■□□□ 1.59
KRT40Q6A162 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
KRT40Q6A162 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.01■■□□□ 1.59
KRT40Q6A162 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
KRT40Q6A162 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KRT40Q6A162 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
KRT40Q6A162 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC25■■□□□ 1.59
KRT40Q6A162 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC25■■□□□ 1.59
KRT40Q6A162 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC25■■□□□ 1.59
KRT40Q6A162 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
KRT40Q6A162 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC25■■□□□ 1.59
KRT40Q6A162 AC091305.1-201ENST00000479476 895 ntBASIC25■■□□□ 1.59
KRT40Q6A162 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC25■■□□□ 1.59
KRT40Q6A162 AP005435.1-201ENST00000529293 1178 ntBASIC25■■□□□ 1.59
KRT40Q6A162 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC25■■□□□ 1.59
KRT40Q6A162 AC087239.1-201ENST00000622671 572 ntBASIC25■■□□□ 1.59
KRT40Q6A162 RARRES2P11-201ENST00000635158 484 ntBASIC25■■□□□ 1.59
KRT40Q6A162 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC25■■□□□ 1.59
KRT40Q6A162 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC25■■□□□ 1.59
KRT40Q6A162 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC25■■□□□ 1.59
KRT40Q6A162 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
KRT40Q6A162 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC24.99■■□□□ 1.59
KRT40Q6A162 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
KRT40Q6A162 BX842568.3-201ENST00000418104 571 ntBASIC24.99■■□□□ 1.59
KRT40Q6A162 PPM1N-207ENST00000451287 1293 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
KRT40Q6A162 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC24.99■■□□□ 1.59
KRT40Q6A162 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
KRT40Q6A162 WWC2-AS2-201ENST00000578387 2183 ntBASIC24.98■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 15.7 ms