Protein–RNA interactions for Protein: Q38SD2

LRRK1, Leucine-rich repeat serine/threonine-protein kinase 1, humanhuman

Predictions only

Length 2,015 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LRRK1Q38SD2 AC009237.3-201ENST00000393279 1427 ntBASIC21.48■■□□□ 1.03
LRRK1Q38SD2 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 SLC2A8-203ENST00000373371 2172 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 LTK-203ENST00000453182 2412 ntTSL 2 BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
LRRK1Q38SD2 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 AP006587.3-201ENST00000525742 1516 ntBASIC21.46■■□□□ 1.03
LRRK1Q38SD2 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 AARD-201ENST00000378279 2299 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 THRA-201ENST00000264637 2538 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 H1FX-AS1-204ENST00000511998 917 ntTSL 5 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 SNRK-203ENST00000437827 1995 ntTSL 2 BASIC21.46■■□□□ 1.03
LRRK1Q38SD2 KRT87P-202ENST00000534226 1464 ntBASIC21.45■■□□□ 1.03
LRRK1Q38SD2 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 CBWD3-202ENST00000377342 1665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 COX20-201ENST00000366528 568 ntTSL 2 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 MFF-207ENST00000409565 1548 ntTSL 2 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 SLC26A5-209ENST00000393735 1947 ntTSL 1 (best) BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 GALNS-213ENST00000569433 723 ntTSL 3 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC21.45■■□□□ 1.02
LRRK1Q38SD2 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 SOCS7-202ENST00000613678 1827 ntTSL 5 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 AL137002.2-201ENST00000639766 2238 ntTSL 5 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 CBWD6-201ENST00000377391 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 AC073343.2-201ENST00000413182 548 ntTSL 4 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 AC090192.1-201ENST00000517740 490 ntBASIC21.44■■□□□ 1.02
LRRK1Q38SD2 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 QPCT-201ENST00000338415 1739 ntAPPRIS P1 TSL 1 (best) BASIC21.44■■□□□ 1.02
LRRK1Q38SD2 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 AC104187.1-201ENST00000607510 612 ntBASIC21.43■■□□□ 1.02
LRRK1Q38SD2 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 AC080038.3-201ENST00000623346 1952 ntBASIC21.43■■□□□ 1.02
LRRK1Q38SD2 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 NPEPL1-201ENST00000356091 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 FDX2-202ENST00000393708 1012 ntAPPRIS P1 TSL 1 (best) BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 FAXDC2-211ENST00000520968 558 ntTSL 4 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 AC007773.1-201ENST00000592680 972 ntTSL 2 BASIC21.43■■□□□ 1.02
LRRK1Q38SD2 PTP4A3-203ENST00000520105 1866 ntTSL 5 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 ILKAP-211ENST00000612675 1335 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 KREMEN2-203ENST00000571007 1877 ntTSL 2 BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 PROSER2-205ENST00000622831 1646 ntAPPRIS ALT2 TSL 1 (best) BASIC21.42■■□□□ 1.02
LRRK1Q38SD2 AC055733.4-201ENST00000638462 1354 ntBASIC21.42■■□□□ 1.02
LRRK1Q38SD2 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC21.41■■□□□ 1.02
LRRK1Q38SD2 NDUFB2-212ENST00000476279 1666 ntAPPRIS P1 TSL 5 BASIC21.41■■□□□ 1.02
Retrieved 100 of 98,524 protein–RNA pairs in 37.6 ms