Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.17■□□□□ 0.18
FOXA3P55318 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA3P55318 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC16.17■□□□□ 0.18
FOXA3P55318 Z98882.1-201ENST00000622160 2253 ntBASIC16.17■□□□□ 0.18
FOXA3P55318 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC16.17■□□□□ 0.18
FOXA3P55318 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC16.17■□□□□ 0.18
FOXA3P55318 GRB10-201ENST00000335866 5032 ntTSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC16.17■□□□□ 0.18
FOXA3P55318 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC16.16■□□□□ 0.18
FOXA3P55318 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 MPC1-201ENST00000341756 976 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 NOX4-204ENST00000393282 560 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC16.16■□□□□ 0.18
FOXA3P55318 RPS2-202ENST00000526522 924 ntTSL 2 BASIC16.16■□□□□ 0.18
FOXA3P55318 MPC1-206ENST00000621630 977 ntAPPRIS ALT1 TSL 5 BASIC16.16■□□□□ 0.18
FOXA3P55318 MPC1-207ENST00000621685 1192 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA3P55318 GAK-223ENST00000628912 497 ntTSL 5 BASIC16.16■□□□□ 0.18
FOXA3P55318 HOXC13-201ENST00000243056 2423 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC16.16■□□□□ 0.18
FOXA3P55318 POU3F2-201ENST00000328345 4879 ntAPPRIS P1 BASIC16.16■□□□□ 0.18
FOXA3P55318 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 FEM1AP4-201ENST00000443167 1987 ntBASIC16.15■□□□□ 0.18
FOXA3P55318 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 SEPT5-201ENST00000383045 1588 ntTSL 5 BASIC16.15■□□□□ 0.18
FOXA3P55318 AC004448.1-201ENST00000458332 883 ntBASIC16.15■□□□□ 0.18
FOXA3P55318 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 LINC01960-201ENST00000563759 1884 ntBASIC16.15■□□□□ 0.18
FOXA3P55318 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC16.15■□□□□ 0.18
FOXA3P55318 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 STARD10-201ENST00000334805 1963 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
FOXA3P55318 ADAMTS19-201ENST00000274487 5234 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXA3P55318 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
FOXA3P55318 AGO3-204ENST00000397828 1035 ntTSL 2 BASIC16.14■□□□□ 0.17
FOXA3P55318 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
FOXA3P55318 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
FOXA3P55318 AGFG2-201ENST00000300176 4796 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
FOXA3P55318 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 KLF13-201ENST00000307145 6825 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
FOXA3P55318 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
FOXA3P55318 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA3P55318 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA3P55318 SLC25A1-201ENST00000215882 1648 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 MYDGF-201ENST00000262947 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 MIR639-201ENST00000384974 98 ntBASIC16.13■□□□□ 0.17
FOXA3P55318 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 RIMKLB-202ENST00000357529 5830 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
FOXA3P55318 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC16.13■□□□□ 0.17
FOXA3P55318 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 TMEM206-205ENST00000535273 2119 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA3P55318 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.13■□□□□ 0.17
FOXA3P55318 KANSL1-218ENST00000638275 5352 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA3P55318 TSR1-201ENST00000301364 5188 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
FOXA3P55318 SLC9A3-AS1-207ENST00000607286 1357 ntTSL 5 BASIC16.13■□□□□ 0.17
FOXA3P55318 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC16.12■□□□□ 0.17
FOXA3P55318 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.12■□□□□ 0.17
FOXA3P55318 NFIX-202ENST00000360105 5459 ntTSL 5 BASIC16.12■□□□□ 0.17
FOXA3P55318 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.12■□□□□ 0.17
FOXA3P55318 AC022616.5-201ENST00000518796 181 ntBASIC16.12■□□□□ 0.17
FOXA3P55318 C19orf12-207ENST00000592153 1504 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 KDM5C-203ENST00000375383 5122 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
FOXA3P55318 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC16.12■□□□□ 0.17
FOXA3P55318 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC16.12■□□□□ 0.17
FOXA3P55318 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.12■□□□□ 0.17
FOXA3P55318 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.12■□□□□ 0.17
FOXA3P55318 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.11■□□□□ 0.17
FOXA3P55318 CDK13-207ENST00000613626 3099 ntTSL 5 BASIC16.11■□□□□ 0.17
FOXA3P55318 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA3P55318 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC16.11■□□□□ 0.17
FOXA3P55318 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA3P55318 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.11■□□□□ 0.17
FOXA3P55318 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC16.11■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 33.6 ms