Protein–RNA interactions for Protein: P02549

SPTA1, Spectrin alpha chain, erythrocytic 1, humanhuman

Predictions only

Length 2,419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SPTA1P02549 ZNF767P-202ENST00000472212 2100 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SPTA1P02549 UBA5-208ENST00000473651 1513 ntTSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SPTA1P02549 CBARP-202ENST00000382477 2453 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 DUSP8P4-201ENST00000399538 1761 ntBASIC19.72■□□□□ 0.75
SPTA1P02549 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SPTA1P02549 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC19.72■□□□□ 0.75
SPTA1P02549 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC19.72■□□□□ 0.75
SPTA1P02549 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 MMD2-204ENST00000612910 778 ntTSL 5 BASIC19.72■□□□□ 0.75
SPTA1P02549 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC19.72■□□□□ 0.75
SPTA1P02549 CUEDC2-201ENST00000369937 1191 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 DHRS4-202ENST00000397074 785 ntTSL 5 BASIC19.71■□□□□ 0.75
SPTA1P02549 LCN6-203ENST00000476567 1015 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 MNX1-AS1-201ENST00000480284 1041 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 RARRES2P4-201ENST00000514074 484 ntBASIC19.71■□□□□ 0.75
SPTA1P02549 AC142381.4-202ENST00000563973 229 ntBASIC19.71■□□□□ 0.75
SPTA1P02549 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 KCNA2-206ENST00000638477 1524 ntTSL 5 BASIC19.71■□□□□ 0.75
SPTA1P02549 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC19.71■□□□□ 0.75
SPTA1P02549 HNRNPL-201ENST00000221419 2471 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SPTA1P02549 MTAP-204ENST00000460874 1434 ntTSL 2 BASIC19.71■□□□□ 0.75
SPTA1P02549 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
SPTA1P02549 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC19.71■□□□□ 0.75
SPTA1P02549 TIMM50-213ENST00000599794 786 ntTSL 2 BASIC19.71■□□□□ 0.75
SPTA1P02549 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
SPTA1P02549 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SPTA1P02549 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC19.7■□□□□ 0.74
SPTA1P02549 ADM-205ENST00000528544 586 ntTSL 2 BASIC19.7■□□□□ 0.74
SPTA1P02549 AC008694.1-202ENST00000636953 945 ntBASIC19.7■□□□□ 0.74
SPTA1P02549 AKT1S1-204ENST00000391832 1911 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SPTA1P02549 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC19.7■□□□□ 0.74
SPTA1P02549 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
SPTA1P02549 BNIP3L-204ENST00000520409 739 ntTSL 2 BASIC19.7■□□□□ 0.74
SPTA1P02549 AC073912.3-201ENST00000624414 853 ntBASIC19.7■□□□□ 0.74
SPTA1P02549 CD99-212ENST00000624481 1089 ntAPPRIS ALT2 TSL 2 BASIC19.7■□□□□ 0.74
SPTA1P02549 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 SLC2A11-202ENST00000316185 1555 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 TMCC2-209ENST00000637895 1455 ntTSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 SNCB-201ENST00000310112 1383 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 TNIP2-206ENST00000510267 2006 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 NUDT22-201ENST00000279206 1094 ntAPPRIS P3 TSL 1 (best) BASIC19.69■□□□□ 0.74
SPTA1P02549 AC093833.1-201ENST00000442821 553 ntTSL 5 BASIC19.69■□□□□ 0.74
SPTA1P02549 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.69■□□□□ 0.74
SPTA1P02549 INO80E-214ENST00000620599 515 ntTSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 FRMD8-203ENST00000416776 1818 ntTSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 GTPBP3-202ENST00000358792 1951 ntAPPRIS P4 TSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 MEIS2-204ENST00000397620 2295 ntTSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC19.69■□□□□ 0.74
SPTA1P02549 ARPC5L-202ENST00000353214 2507 ntAPPRIS P1 TSL 2 BASIC19.69■□□□□ 0.74
SPTA1P02549 AC010141.2-201ENST00000452426 721 ntBASIC19.68■□□□□ 0.74
SPTA1P02549 UBXN2B-206ENST00000638450 591 ntTSL 5 BASIC19.68■□□□□ 0.74
SPTA1P02549 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC19.68■□□□□ 0.74
SPTA1P02549 UNC93B5-201ENST00000530315 699 ntBASIC19.68■□□□□ 0.74
SPTA1P02549 SMARCB1-201ENST00000263121 1690 ntAPPRIS P3 TSL 1 (best) BASIC19.68■□□□□ 0.74
SPTA1P02549 SP5-201ENST00000375281 2033 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
SPTA1P02549 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
SPTA1P02549 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
SPTA1P02549 ALG2-203ENST00000476832 1880 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC19.67■□□□□ 0.74
SPTA1P02549 ADPRHL2-201ENST00000373178 1668 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 CKLF-201ENST00000264001 669 ntAPPRIS P4 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 LINC01578-208ENST00000557147 490 ntTSL 3 BASIC19.67■□□□□ 0.74
SPTA1P02549 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC19.67■□□□□ 0.74
SPTA1P02549 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
SPTA1P02549 UNC93B4-201ENST00000505679 747 ntBASIC19.67■□□□□ 0.74
SPTA1P02549 C14orf28-204ENST00000557112 1097 ntTSL 5 BASIC19.67■□□□□ 0.74
SPTA1P02549 C17orf50-201ENST00000603305 569 ntTSL 3 BASIC19.67■□□□□ 0.74
SPTA1P02549 C17orf50-203ENST00000605587 1018 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 CASP9-203ENST00000375890 1351 ntTSL 2 BASIC19.67■□□□□ 0.74
SPTA1P02549 HSD11B1L-206ENST00000423665 1525 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
SPTA1P02549 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC19.67■□□□□ 0.74
SPTA1P02549 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC19.66■□□□□ 0.74
SPTA1P02549 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SPTA1P02549 ISCU-212ENST00000547005 795 ntTSL 3 BASIC19.66■□□□□ 0.74
SPTA1P02549 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC19.66■□□□□ 0.74
SPTA1P02549 SMIM1-203ENST00000561886 491 ntTSL 2 BASIC19.66■□□□□ 0.74
SPTA1P02549 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
SPTA1P02549 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC19.66■□□□□ 0.74
SPTA1P02549 MAP2K2-201ENST00000262948 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 HSF1-204ENST00000528838 2142 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC19.66■□□□□ 0.74
SPTA1P02549 CLPTM1-201ENST00000337392 2604 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
SPTA1P02549 AL391244.2-201ENST00000428932 543 ntTSL 2 BASIC19.66■□□□□ 0.74
SPTA1P02549 AC073111.3-201ENST00000478789 635 ntAPPRIS P1 TSL 3 BASIC19.66■□□□□ 0.74
SPTA1P02549 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC19.66■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 21.2 ms