Protein–RNA interactions for Protein: O75056

SDC3, Syndecan-3, humanhuman

Predictions only

Length 442 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3O75056 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC21.2■□□□□ 0.98
SDC3O75056 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC21.2■□□□□ 0.98
SDC3O75056 AC009237.3-201ENST00000393279 1427 ntBASIC21.2■□□□□ 0.98
SDC3O75056 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC21.2■□□□□ 0.98
SDC3O75056 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
SDC3O75056 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC21.19■□□□□ 0.98
SDC3O75056 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SDC3O75056 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC21.19■□□□□ 0.98
SDC3O75056 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SDC3O75056 EMC9-206ENST00000560403 872 ntTSL 2 BASIC21.19■□□□□ 0.98
SDC3O75056 MFSD11-216ENST00000590393 1141 ntBASIC21.19■□□□□ 0.98
SDC3O75056 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.19■□□□□ 0.98
SDC3O75056 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
SDC3O75056 ADGRB1-202ENST00000517894 6241 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
SDC3O75056 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.19■□□□□ 0.98
SDC3O75056 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 RAB28-203ENST00000338176 1787 ntTSL 3 BASIC21.18■□□□□ 0.98
SDC3O75056 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC21.18■□□□□ 0.98
SDC3O75056 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC21.18■□□□□ 0.98
SDC3O75056 NOCT-201ENST00000280614 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 ST7-201ENST00000265437 2899 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC21.18■□□□□ 0.98
SDC3O75056 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC21.18■□□□□ 0.98
SDC3O75056 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.18■□□□□ 0.98
SDC3O75056 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
SDC3O75056 OXCT2-201ENST00000327582 1826 ntAPPRIS P1 BASIC21.18■□□□□ 0.98
SDC3O75056 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC21.17■□□□□ 0.98
SDC3O75056 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC21.17■□□□□ 0.98
SDC3O75056 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC21.17■□□□□ 0.98
SDC3O75056 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 DUSP8P5-201ENST00000422884 1815 ntBASIC21.17■□□□□ 0.98
SDC3O75056 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
SDC3O75056 CUEDC1-202ENST00000407144 2190 ntAPPRIS P1 TSL 5 BASIC21.16■□□□□ 0.98
SDC3O75056 AC093323.1-202ENST00000635031 2045 ntBASIC21.16■□□□□ 0.98
SDC3O75056 LINC01960-201ENST00000563759 1884 ntBASIC21.16■□□□□ 0.98
SDC3O75056 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDC3O75056 AC092068.2-201ENST00000590491 1708 ntBASIC21.16■□□□□ 0.98
SDC3O75056 CNIH2-201ENST00000311445 1356 ntAPPRIS P2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDC3O75056 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDC3O75056 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC21.16■□□□□ 0.98
SDC3O75056 NCF1B-203ENST00000435988 1254 ntBASIC21.16■□□□□ 0.98
SDC3O75056 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC21.16■□□□□ 0.98
SDC3O75056 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC21.16■□□□□ 0.98
SDC3O75056 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC21.16■□□□□ 0.98
SDC3O75056 FNDC5-207ENST00000640867 639 ntAPPRIS P2 TSL 2 BASIC21.16■□□□□ 0.98
SDC3O75056 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.16■□□□□ 0.98
SDC3O75056 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
SDC3O75056 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC21.15■□□□□ 0.98
SDC3O75056 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC21.15■□□□□ 0.98
SDC3O75056 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.15■□□□□ 0.98
SDC3O75056 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC21.15■□□□□ 0.98
SDC3O75056 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
SDC3O75056 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC21.15■□□□□ 0.98
SDC3O75056 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SDC3O75056 UBE2DNL-204ENST00000602536 740 ntBASIC21.15■□□□□ 0.98
SDC3O75056 MDK-213ENST00000617138 635 ntTSL 2 BASIC21.15■□□□□ 0.98
SDC3O75056 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SDC3O75056 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
SDC3O75056 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
SDC3O75056 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.98
SDC3O75056 CNTFR-201ENST00000351266 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.98
SDC3O75056 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SDC3O75056 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
SDC3O75056 PARP1-202ENST00000366792 553 ntTSL 3 BASIC21.14■□□□□ 0.97
SDC3O75056 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC21.14■□□□□ 0.97
SDC3O75056 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.14■□□□□ 0.97
SDC3O75056 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC21.14■□□□□ 0.97
SDC3O75056 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC21.14■□□□□ 0.97
SDC3O75056 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC21.14■□□□□ 0.97
SDC3O75056 MAZ-216ENST00000616501 991 ntTSL 5 BASIC21.14■□□□□ 0.97
SDC3O75056 THRA-202ENST00000394121 2260 ntTSL 2 BASIC21.14■□□□□ 0.97
SDC3O75056 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SDC3O75056 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC21.14■□□□□ 0.97
SDC3O75056 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SDC3O75056 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC21.14■□□□□ 0.97
SDC3O75056 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC21.14■□□□□ 0.97
SDC3O75056 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
SDC3O75056 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC21.13■□□□□ 0.97
SDC3O75056 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 GPX1P1-201ENST00000388829 606 ntBASIC21.13■□□□□ 0.97
SDC3O75056 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC21.13■□□□□ 0.97
SDC3O75056 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC21.13■□□□□ 0.97
SDC3O75056 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC21.13■□□□□ 0.97
SDC3O75056 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
SDC3O75056 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
SDC3O75056 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 64 ms