Protein–RNA interactions for Protein: O15347

HMGB3, High mobility group protein B3, humanhuman

Known RBP Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3O15347 MAG-203ENST00000537831 2341 ntTSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB3O15347 FAM99A-202ENST00000538190 1989 ntBASIC17.41■□□□□ 0.38
HMGB3O15347 UPF3A-209ENST00000492270 494 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB3O15347 RASGEF1B-211ENST00000514050 537 ntTSL 2 BASIC17.41■□□□□ 0.38
HMGB3O15347 CEP120-209ENST00000515110 606 ntTSL 3 BASIC17.41■□□□□ 0.38
HMGB3O15347 SLC29A4-202ENST00000396872 5685 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB3O15347 GADD45A-202ENST00000370986 1496 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB3O15347 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC17.41■□□□□ 0.38
HMGB3O15347 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGB3O15347 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 PCSK5-205ENST00000545128 9538 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HMGB3O15347 GALNT2-201ENST00000366672 4454 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 ZNF668-209ENST00000539836 2469 ntTSL 5 BASIC17.4■□□□□ 0.38
HMGB3O15347 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC17.4■□□□□ 0.38
HMGB3O15347 COL18A1-204ENST00000400337 5436 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 FAM98C-202ENST00000343358 1006 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 PKIG-207ENST00000372894 1191 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 ABHD17AP4-201ENST00000411545 909 ntBASIC17.4■□□□□ 0.38
HMGB3O15347 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 SSSCA1-AS1-201ENST00000567594 614 ntBASIC17.4■□□□□ 0.38
HMGB3O15347 TSR3-201ENST00000007390 1243 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC17.4■□□□□ 0.38
HMGB3O15347 AC131274.2-201ENST00000580697 1507 ntBASIC17.4■□□□□ 0.38
HMGB3O15347 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 EFHD2-201ENST00000375980 2419 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 JRK-209ENST00000612905 9124 ntAPPRIS P4 TSL 2 BASIC17.4■□□□□ 0.38
HMGB3O15347 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC17.4■□□□□ 0.38
HMGB3O15347 KCTD13-207ENST00000568000 2528 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 CLPB-202ENST00000340729 2071 ntTSL 2 BASIC17.4■□□□□ 0.38
HMGB3O15347 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC17.4■□□□□ 0.38
HMGB3O15347 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC17.39■□□□□ 0.38
HMGB3O15347 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 KLHDC1-201ENST00000359332 2691 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 WDR90-215ENST00000549091 5589 ntAPPRIS ALT2 TSL 5 BASIC17.39■□□□□ 0.37
HMGB3O15347 MTERF3-204ENST00000523821 1529 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 AL592295.1-201ENST00000400984 884 ntBASIC17.39■□□□□ 0.37
HMGB3O15347 PTPA-210ENST00000414510 1153 ntTSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 FAM136A-202ENST00000430566 885 ntTSL 3 BASIC17.39■□□□□ 0.37
HMGB3O15347 FCGRT-217ENST00000599988 660 ntTSL 5 BASIC17.39■□□□□ 0.37
HMGB3O15347 MEGF9-201ENST00000373930 6298 ntAPPRIS P1 TSL 2 BASIC17.39■□□□□ 0.37
HMGB3O15347 TXNDC5-201ENST00000379757 2964 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 AL353803.4-201ENST00000565882 1934 ntBASIC17.39■□□□□ 0.37
HMGB3O15347 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.39■□□□□ 0.37
HMGB3O15347 ZBTB25-202ENST00000555220 1440 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 KIF16B-206ENST00000636835 5109 ntAPPRIS ALT2 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 SYNGAP1-202ENST00000418600 5828 ntTSL 5 BASIC17.38■□□□□ 0.37
HMGB3O15347 PPM1J-201ENST00000309276 1863 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 SDF2L1-201ENST00000248958 865 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 RPS2P7-201ENST00000447334 885 ntBASIC17.38■□□□□ 0.37
HMGB3O15347 CASTOR2-201ENST00000616305 1257 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC17.38■□□□□ 0.37
HMGB3O15347 ELFN2-207ENST00000613079 8360 ntAPPRIS P1 TSL 4 BASIC17.38■□□□□ 0.37
HMGB3O15347 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.38■□□□□ 0.37
HMGB3O15347 RAB11FIP2-202ENST00000369199 6119 ntTSL 1 (best) BASIC17.38■□□□□ 0.37
HMGB3O15347 SPRED3-201ENST00000338502 4778 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 FBXO25-202ENST00000350302 2229 ntAPPRIS ALT1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB3O15347 SASH1-201ENST00000367467 7711 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC17.37■□□□□ 0.37
HMGB3O15347 ADAMTS7-201ENST00000388820 5490 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 POFUT2-201ENST00000331343 4825 ntTSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC17.37■□□□□ 0.37
HMGB3O15347 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC17.37■□□□□ 0.37
HMGB3O15347 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC17.37■□□□□ 0.37
HMGB3O15347 COL13A1-202ENST00000357811 2991 ntAPPRIS ALT2 TSL 5 BASIC17.37■□□□□ 0.37
HMGB3O15347 SLC25A47-202ENST00000557052 1552 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 FBXW11-203ENST00000393802 2181 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 UBE3A-201ENST00000232165 5051 ntAPPRIS P3 TSL 5 BASIC17.36■□□□□ 0.37
HMGB3O15347 KDM6A-213ENST00000611820 5924 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 HES4-204ENST00000484667 667 ntTSL 3 BASIC17.36■□□□□ 0.37
HMGB3O15347 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.36■□□□□ 0.37
HMGB3O15347 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 NUDT10-201ENST00000356450 1917 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 USP32-201ENST00000300896 5171 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 CLSTN1-202ENST00000377298 5221 ntAPPRIS ALT2 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 AHSA2-202ENST00000394457 6574 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 CLYBL-203ENST00000376355 6771 ntAPPRIS P1 TSL 2 BASIC17.35■□□□□ 0.37
HMGB3O15347 UBE2D2-205ENST00000505548 1113 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 TRIM9-201ENST00000298355 5284 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 RBFOX2-209ENST00000438146 1356 ntAPPRIS P3 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 HMG20B-202ENST00000333651 1596 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
HMGB3O15347 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
Retrieved 100 of 98,524 protein–RNA pairs in 22.3 ms