Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 FAM219A-205ENST00000379084 893 ntTSL 5 BASIC22.08■■□□□ 1.13
CBX4O00257 MOSPD3-202ENST00000379527 1016 ntAPPRIS P1 TSL 5 BASIC22.08■■□□□ 1.13
CBX4O00257 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC22.08■■□□□ 1.13
CBX4O00257 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC22.08■■□□□ 1.13
CBX4O00257 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
CBX4O00257 VAV3-202ENST00000370056 4990 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.12
CBX4O00257 MAPKAPK5-AS1-201ENST00000428207 2290 ntTSL 1 (best) BASIC22.08■■□□□ 1.12
CBX4O00257 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 AC138028.2-201ENST00000440406 1539 ntTSL 2 BASIC22.07■■□□□ 1.12
CBX4O00257 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 AC123595.1-201ENST00000440769 1046 ntBASIC22.07■■□□□ 1.12
CBX4O00257 AC012313.1-204ENST00000444227 462 ntTSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 AL583722.4-201ENST00000555524 716 ntTSL 3 BASIC22.07■■□□□ 1.12
CBX4O00257 ELANE-202ENST00000590230 1028 ntAPPRIS P1 TSL 5 BASIC22.07■■□□□ 1.12
CBX4O00257 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC22.07■■□□□ 1.12
CBX4O00257 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC22.07■■□□□ 1.12
CBX4O00257 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC22.07■■□□□ 1.12
CBX4O00257 AC139530.1-201ENST00000575312 1977 ntBASIC22.07■■□□□ 1.12
CBX4O00257 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 RAB43-208ENST00000615093 783 ntTSL 5 BASIC22.06■■□□□ 1.12
CBX4O00257 LINC02228-203ENST00000641970 1355 ntBASIC22.06■■□□□ 1.12
CBX4O00257 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC22.06■■□□□ 1.12
CBX4O00257 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC22.06■■□□□ 1.12
CBX4O00257 TERT-206ENST00000508104 2486 ntTSL 5 BASIC22.05■■□□□ 1.12
CBX4O00257 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC22.05■■□□□ 1.12
CBX4O00257 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC22.05■■□□□ 1.12
CBX4O00257 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC22.05■■□□□ 1.12
CBX4O00257 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC22.05■■□□□ 1.12
CBX4O00257 LSM14B-201ENST00000279068 2548 ntAPPRIS P1 TSL 5 BASIC22.05■■□□□ 1.12
CBX4O00257 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CBX4O00257 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC22.05■■□□□ 1.12
CBX4O00257 MFSD14C-201ENST00000375223 619 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CBX4O00257 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC22.05■■□□□ 1.12
CBX4O00257 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC22.05■■□□□ 1.12
CBX4O00257 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CBX4O00257 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC22.05■■□□□ 1.12
CBX4O00257 GALK1-201ENST00000225614 1445 ntAPPRIS P1 TSL 2 BASIC22.05■■□□□ 1.12
CBX4O00257 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CBX4O00257 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC22.04■■□□□ 1.12
CBX4O00257 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CBX4O00257 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CBX4O00257 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC22.04■■□□□ 1.12
CBX4O00257 AC090192.1-201ENST00000517740 490 ntBASIC22.04■■□□□ 1.12
CBX4O00257 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC22.04■■□□□ 1.12
CBX4O00257 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CBX4O00257 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC22.04■■□□□ 1.12
CBX4O00257 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC22.03■■□□□ 1.12
CBX4O00257 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 AC080038.3-201ENST00000623346 1952 ntBASIC22.03■■□□□ 1.12
CBX4O00257 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC22.03■■□□□ 1.12
CBX4O00257 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 AC093817.1-201ENST00000507296 812 ntTSL 3 BASIC22.03■■□□□ 1.12
CBX4O00257 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC22.03■■□□□ 1.12
CBX4O00257 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC22.03■■□□□ 1.12
CBX4O00257 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 ST7L-201ENST00000343210 1866 ntAPPRIS P1 TSL 1 (best) BASIC22.03■■□□□ 1.12
CBX4O00257 AC127496.7-201ENST00000625110 1798 ntBASIC22.02■■□□□ 1.12
CBX4O00257 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CBX4O00257 EIF6-203ENST00000374450 1289 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.12
CBX4O00257 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC22.02■■□□□ 1.12
CBX4O00257 CCDC92B-201ENST00000575506 885 ntBASIC22.02■■□□□ 1.12
CBX4O00257 AC022517.1-201ENST00000592429 346 ntBASIC22.02■■□□□ 1.12
CBX4O00257 TPRG1LP1-201ENST00000598702 760 ntBASIC22.02■■□□□ 1.12
CBX4O00257 RARRES2P11-201ENST00000635158 484 ntBASIC22.02■■□□□ 1.12
CBX4O00257 AL831711.1-201ENST00000636824 569 ntTSL 4 BASIC22.02■■□□□ 1.12
CBX4O00257 CDCP1-202ENST00000425231 1416 ntAPPRIS ALT2 TSL 1 (best) BASIC22.02■■□□□ 1.12
CBX4O00257 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC22.02■■□□□ 1.12
CBX4O00257 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CBX4O00257 TMEM5-201ENST00000261234 1918 ntAPPRIS P1 TSL 1 (best) BASIC22.02■■□□□ 1.11
CBX4O00257 AP004607.7-201ENST00000527152 1677 ntBASIC22.01■■□□□ 1.11
CBX4O00257 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CBX4O00257 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC22.01■■□□□ 1.11
CBX4O00257 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CBX4O00257 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC22.01■■□□□ 1.11
CBX4O00257 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
CBX4O00257 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC22.01■■□□□ 1.11
CBX4O00257 AC034268.1-201ENST00000441047 882 ntBASIC22.01■■□□□ 1.11
CBX4O00257 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
CBX4O00257 MAPK9-206ENST00000425491 2266 ntTSL 5 BASIC22.01■■□□□ 1.11
CBX4O00257 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC22.01■■□□□ 1.11
CBX4O00257 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
Retrieved 100 of 98,524 protein–RNA pairs in 24 ms