Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLRN3Q8NCR9 SNAI3-AS1-204ENST00000567997 2048 ntBASIC21.86■■□□□ 1.09
CLRN3Q8NCR9 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLRN3Q8NCR9 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.86■■□□□ 1.09
CLRN3Q8NCR9 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC21.85■■□□□ 1.09
CLRN3Q8NCR9 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC21.85■■□□□ 1.09
CLRN3Q8NCR9 CTU1-201ENST00000421832 2087 ntAPPRIS P1 TSL 2 BASIC21.84■■□□□ 1.09
CLRN3Q8NCR9 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLRN3Q8NCR9 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLRN3Q8NCR9 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
CLRN3Q8NCR9 TAZ-205ENST00000475699 1862 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
CLRN3Q8NCR9 SLC25A28-201ENST00000370495 1451 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
CLRN3Q8NCR9 KCNQ3-202ENST00000519445 2801 ntAPPRIS ALT2 TSL 5 BASIC21.83■■□□□ 1.08
CLRN3Q8NCR9 CPNE1-202ENST00000352393 2147 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN3Q8NCR9 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN3Q8NCR9 KLHL35-204ENST00000539798 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN3Q8NCR9 TWIST1-201ENST00000242261 1666 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN3Q8NCR9 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
CLRN3Q8NCR9 SNTB1-202ENST00000517992 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN3Q8NCR9 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC21.81■■□□□ 1.08
CLRN3Q8NCR9 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN3Q8NCR9 PEA15-201ENST00000360472 2471 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
CLRN3Q8NCR9 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.8■■□□□ 1.08
CLRN3Q8NCR9 PKM-204ENST00000449901 2526 ntTSL 2 BASIC21.79■■□□□ 1.08
CLRN3Q8NCR9 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC21.78■■□□□ 1.08
CLRN3Q8NCR9 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC21.77■■□□□ 1.08
CLRN3Q8NCR9 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC21.77■■□□□ 1.08
CLRN3Q8NCR9 SHD-201ENST00000543264 2577 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
CLRN3Q8NCR9 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLRN3Q8NCR9 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC21.76■■□□□ 1.07
CLRN3Q8NCR9 BCL7B-201ENST00000223368 1975 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
CLRN3Q8NCR9 OTUD5-208ENST00000610466 2487 ntTSL 5 BASIC21.75■■□□□ 1.07
CLRN3Q8NCR9 GATA6-202ENST00000581694 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN3Q8NCR9 ARTN-202ENST00000372359 1921 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN3Q8NCR9 B4GALT7-201ENST00000029410 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
CLRN3Q8NCR9 MORF4L1-202ENST00000379535 2274 ntTSL 2 BASIC21.73■■□□□ 1.07
CLRN3Q8NCR9 FANCE-201ENST00000229769 2554 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
CLRN3Q8NCR9 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC21.72■■□□□ 1.07
CLRN3Q8NCR9 ANKRD53-201ENST00000272421 2185 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
CLRN3Q8NCR9 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC21.71■■□□□ 1.07
CLRN3Q8NCR9 RUNDC3A-201ENST00000225441 1821 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN3Q8NCR9 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN3Q8NCR9 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC21.71■■□□□ 1.07
CLRN3Q8NCR9 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
CLRN3Q8NCR9 NPAS3-203ENST00000357798 2763 ntAPPRIS ALT2 TSL 1 (best) BASIC21.7■■□□□ 1.07
CLRN3Q8NCR9 ATRNL1-207ENST00000527407 1583 ntTSL 5 BASIC21.7■■□□□ 1.06
CLRN3Q8NCR9 RNF126-201ENST00000292363 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
CLRN3Q8NCR9 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC21.69■■□□□ 1.06
CLRN3Q8NCR9 BIN1-210ENST00000393041 2272 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
CLRN3Q8NCR9 ADRA2C-202ENST00000509482 1600 ntTSL 3 BASIC21.69■■□□□ 1.06
CLRN3Q8NCR9 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC21.69■■□□□ 1.06
CLRN3Q8NCR9 ROM1-201ENST00000278833 1878 ntAPPRIS P2 TSL 1 (best) BASIC21.68■■□□□ 1.06
CLRN3Q8NCR9 NAPA-201ENST00000263354 1839 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN3Q8NCR9 NT5M-207ENST00000616989 1635 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
CLRN3Q8NCR9 OTUD5-201ENST00000156084 2740 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
CLRN3Q8NCR9 ARMC10-208ENST00000441711 2524 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN3Q8NCR9 ST6GALNAC6-204ENST00000373144 2406 ntAPPRIS ALT1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN3Q8NCR9 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN3Q8NCR9 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC21.65■■□□□ 1.06
CLRN3Q8NCR9 MFSD12-202ENST00000389395 2039 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN3Q8NCR9 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
CLRN3Q8NCR9 ANGPTL6-204ENST00000592641 1781 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
CLRN3Q8NCR9 HOXB3-212ENST00000498678 2196 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
CLRN3Q8NCR9 GIPC1-205ENST00000586027 1386 ntAPPRIS P1 TSL 2 BASIC21.63■■□□□ 1.05
CLRN3Q8NCR9 MAPK12-201ENST00000215659 1918 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
CLRN3Q8NCR9 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN3Q8NCR9 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN3Q8NCR9 FADS3-201ENST00000278829 1779 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN3Q8NCR9 MRAP2-201ENST00000257776 2153 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN3Q8NCR9 PANK2-207ENST00000610179 1807 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
CLRN3Q8NCR9 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC21.61■■□□□ 1.05
CLRN3Q8NCR9 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
CLRN3Q8NCR9 ETS1-201ENST00000319397 2231 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
CLRN3Q8NCR9 NIT1-201ENST00000368007 1749 ntTSL 2 BASIC21.6■■□□□ 1.05
CLRN3Q8NCR9 MSRB2-201ENST00000376510 1803 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLRN3Q8NCR9 UBE2M-201ENST00000253023 1508 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
CLRN3Q8NCR9 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.05
CLRN3Q8NCR9 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC21.58■■□□□ 1.05
CLRN3Q8NCR9 MAPKAPK2-201ENST00000294981 2171 ntTSL 1 (best) BASIC21.58■■□□□ 1.04
CLRN3Q8NCR9 ZFPM1-201ENST00000319555 5380 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
CLRN3Q8NCR9 DDX42-201ENST00000359353 2783 ntTSL 5 BASIC21.58■■□□□ 1.04
CLRN3Q8NCR9 PKM-203ENST00000389093 2279 ntTSL 5 BASIC21.57■■□□□ 1.04
CLRN3Q8NCR9 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC21.57■■□□□ 1.04
CLRN3Q8NCR9 ANXA5-201ENST00000296511 1762 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLRN3Q8NCR9 AC142086.6-201ENST00000621154 1765 ntBASIC21.57■■□□□ 1.04
CLRN3Q8NCR9 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC21.57■■□□□ 1.04
CLRN3Q8NCR9 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC21.56■■□□□ 1.04
CLRN3Q8NCR9 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC21.56■■□□□ 1.04
CLRN3Q8NCR9 BRF1-221ENST00000619151 1530 ntTSL 5 BASIC21.56■■□□□ 1.04
CLRN3Q8NCR9 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
CLRN3Q8NCR9 VPS37D-201ENST00000324941 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
CLRN3Q8NCR9 RNF215-203ENST00000382363 1992 ntAPPRIS P2 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN3Q8NCR9 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC21.54■■□□□ 1.04
CLRN3Q8NCR9 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
CLRN3Q8NCR9 OTUD5-202ENST00000376488 2692 ntAPPRIS ALT1 TSL 1 (best) BASIC21.53■■□□□ 1.04
CLRN3Q8NCR9 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.53■■□□□ 1.04
CLRN3Q8NCR9 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC21.53■■□□□ 1.04
CLRN3Q8NCR9 PLBD2-202ENST00000545182 2321 ntTSL 2 BASIC21.52■■□□□ 1.04
CLRN3Q8NCR9 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC21.52■■□□□ 1.04
CLRN3Q8NCR9 NT5M-201ENST00000389022 1617 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms