Protein–RNA interactions for Protein: P56747

CLDN6, Claudin-6, humanhuman

Predictions only

Length 220 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLDN6P56747 VEGFA-207ENST00000413642 1197 ntAPPRIS ALT2 TSL 1 (best) BASIC26.52■■□□□ 1.84
CLDN6P56747 B4GALT2-203ENST00000372324 2203 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.84
CLDN6P56747 SLC22A23-201ENST00000380298 1574 ntTSL 1 (best) BASIC26.51■■□□□ 1.83
CLDN6P56747 NME2-202ENST00000393190 866 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CLDN6P56747 SFRP5-201ENST00000266066 1836 ntAPPRIS P1 TSL 1 (best) BASIC26.51■■□□□ 1.83
CLDN6P56747 ADRA2C-201ENST00000330055 2129 ntAPPRIS P1 BASIC26.5■■□□□ 1.83
CLDN6P56747 BOD1-201ENST00000285908 1286 ntTSL 1 (best) BASIC26.5■■□□□ 1.83
CLDN6P56747 BOD1-206ENST00000480951 814 ntTSL 2 BASIC26.5■■□□□ 1.83
CLDN6P56747 PABPN1-201ENST00000216727 2001 ntAPPRIS P2 TSL 1 (best) BASIC26.49■■□□□ 1.83
CLDN6P56747 DENR-202ENST00000455982 1052 ntTSL 5 BASIC26.48■■□□□ 1.83
CLDN6P56747 WNT5A-AS1-201ENST00000469484 500 ntTSL 3 BASIC26.47■■□□□ 1.83
CLDN6P56747 CDKN2A-201ENST00000304494 1218 ntTSL 1 (best) BASIC26.46■■□□□ 1.83
CLDN6P56747 U2AF2-206ENST00000590551 1104 ntTSL 3 BASIC26.46■■□□□ 1.83
CLDN6P56747 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC26.44■■□□□ 1.82
CLDN6P56747 HGH1-207ENST00000628266 258 ntTSL 5 BASIC26.44■■□□□ 1.82
CLDN6P56747 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC26.43■■□□□ 1.82
CLDN6P56747 CSNK1E-205ENST00000405675 2127 ntTSL 5 BASIC26.42■■□□□ 1.82
CLDN6P56747 HDAC11-206ENST00000405025 576 ntTSL 4 BASIC26.41■■□□□ 1.82
CLDN6P56747 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC26.41■■□□□ 1.82
CLDN6P56747 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC26.4■■□□□ 1.82
CLDN6P56747 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC26.39■■□□□ 1.82
CLDN6P56747 HS3ST6-201ENST00000454677 1273 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.82
CLDN6P56747 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC26.39■■□□□ 1.82
CLDN6P56747 RPS2-202ENST00000526522 924 ntTSL 2 BASIC26.39■■□□□ 1.82
CLDN6P56747 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC26.39■■□□□ 1.81
CLDN6P56747 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC26.38■■□□□ 1.81
CLDN6P56747 WASH5P-204ENST00000632292 975 ntBASIC26.38■■□□□ 1.81
CLDN6P56747 SLC35D2-202ENST00000375257 889 ntTSL 2 BASIC26.36■■□□□ 1.81
CLDN6P56747 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC26.36■■□□□ 1.81
CLDN6P56747 ACOT12-204ENST00000513751 612 ntTSL 1 (best) BASIC26.35■■□□□ 1.81
CLDN6P56747 AC096888.1-201ENST00000487097 565 ntTSL 4 BASIC26.34■■□□□ 1.81
CLDN6P56747 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC26.33■■□□□ 1.81
CLDN6P56747 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC26.33■■□□□ 1.81
CLDN6P56747 SMARCD3-201ENST00000262188 1993 ntAPPRIS P1 TSL 1 (best) BASIC26.31■■□□□ 1.8
CLDN6P56747 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC26.31■■□□□ 1.8
CLDN6P56747 RPS2-209ENST00000529806 993 ntTSL 3 BASIC26.31■■□□□ 1.8
CLDN6P56747 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLDN6P56747 DBP-205ENST00000601104 1489 ntTSL 1 (best) BASIC26.3■■□□□ 1.8
CLDN6P56747 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CLDN6P56747 AL451007.3-201ENST00000640271 588 ntAPPRIS P1 BASIC26.29■■□□□ 1.8
CLDN6P56747 KCTD17-201ENST00000402077 1691 ntAPPRIS P3 TSL 1 (best) BASIC26.28■■□□□ 1.8
CLDN6P56747 SSU72-201ENST00000291386 1290 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN6P56747 RPS2-201ENST00000343262 985 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN6P56747 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC26.27■■□□□ 1.8
CLDN6P56747 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC26.27■■□□□ 1.8
CLDN6P56747 DUSP14-206ENST00000617516 1537 ntAPPRIS P1 TSL 1 (best) BASIC26.26■■□□□ 1.79
CLDN6P56747 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC26.26■■□□□ 1.79
CLDN6P56747 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CLDN6P56747 DUX4L29-201ENST00000425409 679 ntBASIC26.26■■□□□ 1.79
CLDN6P56747 INO80B-WBP1-202ENST00000452361 2040 ntAPPRIS P5 TSL 2 BASIC26.26■■□□□ 1.79
CLDN6P56747 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC26.25■■□□□ 1.79
CLDN6P56747 KIAA2013-203ENST00000616327 2170 ntAPPRIS P1 TSL 5 BASIC26.24■■□□□ 1.79
CLDN6P56747 GSC-201ENST00000238558 1264 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN6P56747 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC26.23■■□□□ 1.79
CLDN6P56747 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN6P56747 LAPTM4B-203ENST00000521545 915 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN6P56747 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN6P56747 CHMP4B-201ENST00000217402 1646 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN6P56747 CACNG6-201ENST00000252729 1853 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CLDN6P56747 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC26.22■■□□□ 1.79
CLDN6P56747 ATRAID-201ENST00000380171 1240 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CLDN6P56747 AC021231.2-201ENST00000594613 730 ntBASIC26.21■■□□□ 1.79
CLDN6P56747 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC26.21■■□□□ 1.79
CLDN6P56747 MAPK3-201ENST00000263025 1861 ntAPPRIS P3 TSL 1 (best) BASIC26.2■■□□□ 1.78
CLDN6P56747 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC26.19■■□□□ 1.78
CLDN6P56747 HSD11B1L-209ENST00000577917 1553 ntTSL 1 (best) BASIC26.18■■□□□ 1.78
CLDN6P56747 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC26.14■■□□□ 1.78
CLDN6P56747 AL118558.1-203ENST00000553701 447 ntTSL 3 BASIC26.14■■□□□ 1.78
CLDN6P56747 MIR4449-201ENST00000578365 66 ntBASIC26.14■■□□□ 1.78
CLDN6P56747 RCE1-201ENST00000309657 1485 ntAPPRIS P1 TSL 1 (best) BASIC26.11■■□□□ 1.77
CLDN6P56747 CIB2-204ENST00000557846 934 ntTSL 3 BASIC26.1■■□□□ 1.77
CLDN6P56747 CGREF1-202ENST00000312734 1610 ntAPPRIS P2 TSL 5 BASIC26.09■■□□□ 1.77
CLDN6P56747 HDAC3-201ENST00000305264 1959 ntAPPRIS P1 TSL 1 (best) BASIC26.08■■□□□ 1.77
CLDN6P56747 MIR639-201ENST00000384974 98 ntBASIC26.08■■□□□ 1.77
CLDN6P56747 MIR6090-201ENST00000622481 60 ntBASIC26.07■■□□□ 1.76
CLDN6P56747 KRT18-201ENST00000388835 1562 ntAPPRIS P1 TSL 1 (best) BASIC26.07■■□□□ 1.76
CLDN6P56747 RNF150-204ENST00000507500 1530 ntTSL 1 (best) BASIC26.06■■□□□ 1.76
CLDN6P56747 RNF166-209ENST00000567844 633 ntTSL 5 BASIC26.06■■□□□ 1.76
CLDN6P56747 AC016575.1-201ENST00000607026 382 ntBASIC26.06■■□□□ 1.76
CLDN6P56747 SERINC2-201ENST00000373709 1997 ntAPPRIS P1 TSL 1 (best) BASIC26.06■■□□□ 1.76
CLDN6P56747 FEZF2-201ENST00000283268 2074 ntAPPRIS P1 TSL 1 (best) BASIC26.05■■□□□ 1.76
CLDN6P56747 GRPEL2-204ENST00000513661 546 ntTSL 2 BASIC26.04■■□□□ 1.76
CLDN6P56747 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC26.03■■□□□ 1.76
CLDN6P56747 TXNL4A-210ENST00000591711 669 ntTSL 2 BASIC26.03■■□□□ 1.76
CLDN6P56747 MACF1-219ENST00000484793 834 ntTSL 2 BASIC26.02■■□□□ 1.76
CLDN6P56747 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CLDN6P56747 CRIP1-201ENST00000330233 1311 ntAPPRIS P1 TSL 1 (best) BASIC26.01■■□□□ 1.75
CLDN6P56747 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC26.01■■□□□ 1.75
CLDN6P56747 KCNK1-202ENST00000366621 2161 ntAPPRIS P1 TSL 1 (best) BASIC26■■□□□ 1.75
CLDN6P56747 GDI1-215ENST00000630693 786 ntTSL 4 BASIC26■■□□□ 1.75
CLDN6P56747 MIR3648-2-201ENST00000581792 180 ntBASIC25.99■■□□□ 1.75
CLDN6P56747 MIR3648-1-201ENST00000615959 180 ntBASIC25.99■■□□□ 1.75
CLDN6P56747 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC25.99■■□□□ 1.75
CLDN6P56747 RP9-201ENST00000297157 1121 ntAPPRIS P2 TSL 1 (best) BASIC25.97■■□□□ 1.75
CLDN6P56747 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC25.97■■□□□ 1.75
CLDN6P56747 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC25.97■■□□□ 1.75
CLDN6P56747 CENPV-201ENST00000299736 1165 ntAPPRIS P1 TSL 1 (best) BASIC25.96■■□□□ 1.75
CLDN6P56747 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC25.95■■□□□ 1.75
CLDN6P56747 AC012615.2-201ENST00000586259 447 ntTSL 4 BASIC25.95■■□□□ 1.74
CLDN6P56747 HSD17B1P1-201ENST00000590052 955 ntBASIC25.95■■□□□ 1.74
Retrieved 100 of 98,524 protein–RNA pairs in 51.8 ms