Protein–RNA interactions for Protein: P33552

CKS2, Cyclin-dependent kinases regulatory subunit 2, humanhuman

Predictions only

Length 79 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CKS2P33552 PHOX2A-201ENST00000298231 1699 ntAPPRIS P1 TSL 1 (best) BASIC19.95■□□□□ 0.78
CKS2P33552 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC19.95■□□□□ 0.78
CKS2P33552 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CKS2P33552 PURG-201ENST00000339382 2693 ntTSL 1 (best) BASIC19.94■□□□□ 0.78
CKS2P33552 GIPC1-203ENST00000393033 1926 ntAPPRIS P1 TSL 1 (best) BASIC19.94■□□□□ 0.78
CKS2P33552 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CKS2P33552 CMTM4-202ENST00000394106 1187 ntAPPRIS P1 TSL 1 (best) BASIC19.93■□□□□ 0.78
CKS2P33552 CMTM4-204ENST00000563952 1023 ntTSL 1 (best) BASIC19.93■□□□□ 0.78
CKS2P33552 FAM117A-201ENST00000240364 2365 ntAPPRIS P2 TSL 1 (best) BASIC19.93■□□□□ 0.78
CKS2P33552 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC19.93■□□□□ 0.78
CKS2P33552 BMP7-202ENST00000395864 1746 ntTSL 5 BASIC19.93■□□□□ 0.78
CKS2P33552 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC19.92■□□□□ 0.78
CKS2P33552 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CKS2P33552 CADPS-215ENST00000490353 2669 ntTSL 5 BASIC19.9■□□□□ 0.78
CKS2P33552 JUND-201ENST00000252818 1863 ntAPPRIS P1 BASIC19.9■□□□□ 0.78
CKS2P33552 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC19.9■□□□□ 0.78
CKS2P33552 VWA1-201ENST00000338660 2147 ntTSL 2 BASIC19.9■□□□□ 0.78
CKS2P33552 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CKS2P33552 PQLC1-203ENST00000397778 2555 ntAPPRIS P3 TSL 1 (best) BASIC19.89■□□□□ 0.77
CKS2P33552 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
CKS2P33552 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CKS2P33552 HMX1-201ENST00000400677 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CKS2P33552 NFKBIA-209ENST00000557389 1537 ntTSL 2 BASIC19.86■□□□□ 0.77
CKS2P33552 HOXB3-207ENST00000472863 1909 ntTSL 2 BASIC19.85■□□□□ 0.77
CKS2P33552 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
CKS2P33552 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
CKS2P33552 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC19.84■□□□□ 0.77
CKS2P33552 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC19.83■□□□□ 0.77
CKS2P33552 SECTM1-201ENST00000269389 2235 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.77
CKS2P33552 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC19.83■□□□□ 0.76
CKS2P33552 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC19.81■□□□□ 0.76
CKS2P33552 CCNG2-201ENST00000316355 5526 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
CKS2P33552 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC19.81■□□□□ 0.76
CKS2P33552 ITGA9-203ENST00000422441 2282 ntTSL 1 (best) BASIC19.8■□□□□ 0.76
CKS2P33552 ZNF219-201ENST00000360947 3071 ntAPPRIS P1 TSL 1 (best) BASIC19.8■□□□□ 0.76
CKS2P33552 CACNA1H-201ENST00000348261 8208 ntAPPRIS P4 TSL 1 (best) BASIC19.8■□□□□ 0.76
CKS2P33552 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC19.8■□□□□ 0.76
CKS2P33552 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC19.79■□□□□ 0.76
CKS2P33552 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC19.78■□□□□ 0.76
CKS2P33552 DEXI-201ENST00000331808 1561 ntAPPRIS P1 TSL 1 (best) BASIC19.78■□□□□ 0.76
CKS2P33552 SENP3-201ENST00000321337 2611 ntAPPRIS P1 TSL 1 (best) BASIC19.77■□□□□ 0.76
CKS2P33552 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CKS2P33552 TMEM80-202ENST00000397512 1572 ntAPPRIS ALT2 TSL 1 (best) BASIC19.77■□□□□ 0.76
CKS2P33552 CD151-202ENST00000397420 1648 ntAPPRIS P2 TSL 1 (best) BASIC19.76■□□□□ 0.75
CKS2P33552 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC19.75■□□□□ 0.75
CKS2P33552 AL357033.3-201ENST00000620143 614 ntTSL 3 BASIC19.75■□□□□ 0.75
CKS2P33552 RAB40C-201ENST00000248139 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CKS2P33552 LMTK3-201ENST00000270238 4972 ntAPPRIS P2 TSL 1 (best) BASIC19.75■□□□□ 0.75
CKS2P33552 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CKS2P33552 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CKS2P33552 TMEM9-201ENST00000367330 1959 ntAPPRIS P3 TSL 1 (best) BASIC19.74■□□□□ 0.75
CKS2P33552 TRNP1-201ENST00000522111 1958 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CKS2P33552 INO80B-203ENST00000409917 796 ntTSL 2 BASIC19.74■□□□□ 0.75
CKS2P33552 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CKS2P33552 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CKS2P33552 CTBP1-201ENST00000290921 2297 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CKS2P33552 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CKS2P33552 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC19.69■□□□□ 0.74
CKS2P33552 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC19.69■□□□□ 0.74
CKS2P33552 LY6K-202ENST00000518841 855 ntAPPRIS ALT2 TSL 2 BASIC19.68■□□□□ 0.74
CKS2P33552 AC015813.7-201ENST00000623294 581 ntBASIC19.68■□□□□ 0.74
CKS2P33552 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CKS2P33552 MBOAT7-203ENST00000391754 1797 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CKS2P33552 PI4KAP1-202ENST00000611748 1906 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CKS2P33552 GALR3-201ENST00000249041 1157 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CKS2P33552 TCFL5-201ENST00000217162 2453 ntAPPRIS ALT2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CKS2P33552 TCFL5-202ENST00000335351 2456 ntAPPRIS P2 TSL 1 (best) BASIC19.67■□□□□ 0.74
CKS2P33552 SH3GL3-202ENST00000427482 1806 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CKS2P33552 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC19.66■□□□□ 0.74
CKS2P33552 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC19.66■□□□□ 0.74
CKS2P33552 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC19.65■□□□□ 0.74
CKS2P33552 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC19.65■□□□□ 0.74
CKS2P33552 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CKS2P33552 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC19.64■□□□□ 0.74
CKS2P33552 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.74
CKS2P33552 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC19.64■□□□□ 0.73
CKS2P33552 CCDC88C-205ENST00000553403 1651 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CKS2P33552 FTCD-202ENST00000397743 1834 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
CKS2P33552 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CKS2P33552 CRIM1-201ENST00000280527 5912 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CKS2P33552 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC19.64■□□□□ 0.73
CKS2P33552 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC19.63■□□□□ 0.73
CKS2P33552 C9orf40-201ENST00000376854 2327 ntAPPRIS P1 TSL 1 (best) BASIC19.63■□□□□ 0.73
CKS2P33552 CPNE1-203ENST00000397442 1695 ntTSL 5 BASIC19.62■□□□□ 0.73
CKS2P33552 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC19.62■□□□□ 0.73
CKS2P33552 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC19.61■□□□□ 0.73
CKS2P33552 LDB1-202ENST00000425280 2089 ntTSL 5 BASIC19.61■□□□□ 0.73
CKS2P33552 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC19.61■□□□□ 0.73
CKS2P33552 TADA2B-201ENST00000310074 4350 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CKS2P33552 ST7-AS1-201ENST00000456775 1889 ntBASIC19.6■□□□□ 0.73
CKS2P33552 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC19.6■□□□□ 0.73
CKS2P33552 CMAS-201ENST00000229329 1787 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CKS2P33552 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CKS2P33552 ARL8A-201ENST00000272217 1793 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CKS2P33552 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC19.58■□□□□ 0.73
CKS2P33552 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CKS2P33552 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CKS2P33552 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC19.57■□□□□ 0.72
CKS2P33552 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CKS2P33552 MLST8-203ENST00000397124 1691 ntAPPRIS P3 TSL 5 BASIC19.55■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms