Protein–RNA interactions for Protein: P23246

SFPQ, Splicing factor, proline- and glutamine-rich, humanhuman

Known RBP eCLIP

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SFPQP23246 RAD51B-205ENST00000471583 1536 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.463e-6■■■■■ 27.1
SFPQP23246 KDELR2-205ENST00000463747 376 ntTSL 511.91□□□□□ -0.53e-6■■■■■ 27.1
SFPQP23246 G3BP2-204ENST00000499709 508 ntTSL 411.9□□□□□ -0.53e-6■■■■■ 27.1
SFPQP23246 G3BP2-208ENST00000507252 567 ntTSL 411.84□□□□□ -0.513e-6■■■■■ 27.1
SFPQP23246 ZNF331-220ENST00000513999 1890 ntAPPRIS P1 TSL 1 (best) BASIC11.55□□□□□ -0.563e-6■■■■■ 27.1
SFPQP23246 G3BP2-217ENST00000511868 573 ntTSL 211.19□□□□□ -0.623e-6■■■■■ 27.1
SFPQP23246 RAD51B-208ENST00000479335 1615 ntTSL 1 (best)10.99□□□□□ -0.653e-6■■■■■ 27.1
SFPQP23246 KDELR2-202ENST00000382267 583 ntTSL 410.95□□□□□ -0.663e-6■■■■■ 27.1
SFPQP23246 EIF4A1-217ENST00000581384 642 ntTSL 510.94□□□□□ -0.663e-6■■■■■ 27.1
SFPQP23246 CORO1C-217ENST00000551550 547 ntTSL 410.71□□□□□ -0.693e-6■■■■■ 27.1
SFPQP23246 MIR4664-201ENST00000583819 71 ntBASIC10.48□□□□□ -0.733e-6■■■■■ 27.1
SFPQP23246 G3BP2-209ENST00000507701 678 ntTSL 210.15□□□□□ -0.783e-6■■■■■ 27.1
SFPQP23246 RAD51B-211ENST00000487861 1673 ntTSL 1 (best) BASIC8.97□□□□□ -0.973e-6■■■■■ 27.1
SFPQP23246 KDELR2-204ENST00000462052 382 ntTSL 28.91□□□□□ -0.983e-6■■■■■ 27.1
SFPQP23246 G3BP2-210ENST00000507745 584 ntTSL 48.91□□□□□ -0.983e-6■■■■■ 27.1
SFPQP23246 G3BP2-216ENST00000511146 577 ntTSL 38.86□□□□□ -0.993e-6■■■■■ 27.1
SFPQP23246 RAD51B-212ENST00000488612 1550 ntTSL 1 (best) BASIC8.82□□□□□ -13e-6■■■■■ 27.1
SFPQP23246 CORO1C-215ENST00000551044 567 ntTSL 38.39□□□□□ -1.073e-6■■■■■ 27.1
SFPQP23246 HNF4G-202ENST00000396419 410 ntTSL 38.28□□□□□ -1.083e-6■■■■■ 27.1
SFPQP23246 G3BP2-203ENST00000395719 4217 ntAPPRIS P4 TSL 1 (best) BASIC8.27□□□□□ -1.093e-6■■■■■ 27.1
SFPQP23246 RAD51B-204ENST00000469165 1158 ntTSL 37.96□□□□□ -1.143e-6■■■■■ 27.1
SFPQP23246 RAD51B-202ENST00000460526 794 ntTSL 37.96□□□□□ -1.143e-6■■■■■ 27.1
SFPQP23246 G3BP2-214ENST00000509561 559 ntTSL 47.91□□□□□ -1.143e-6■■■■■ 27.1
SFPQP23246 RAD51B-210ENST00000487270 2596 ntTSL 1 (best) BASIC7.66□□□□□ -1.183e-6■■■■■ 27.1
SFPQP23246 G3BP2-212ENST00000508510 554 ntTSL 57.36□□□□□ -1.233e-6■■■■■ 27.1
SFPQP23246 LPP-210ENST00000457242 479 ntTSL 27.24□□□□□ -1.253e-6■■■■■ 27.1
SFPQP23246 RAD51B-203ENST00000468382 829 ntTSL 57.24□□□□□ -1.253e-6■■■■■ 27.1
SFPQP23246 RAD51B-207ENST00000478014 618 ntTSL 37.19□□□□□ -1.263e-6■■■■■ 27.1
SFPQP23246 RAD51B-224ENST00000557045 528 ntTSL 37.15□□□□□ -1.263e-6■■■■■ 27.1
SFPQP23246 KDELR2-206ENST00000490996 655 ntTSL 1 (best) BASIC7.11□□□□□ -1.273e-6■■■■■ 27.1
SFPQP23246 RAD51B-219ENST00000554244 669 ntTSL 36.71□□□□□ -1.343e-6■■■■■ 27.1
SFPQP23246 G3BP2-213ENST00000509100 514 ntTSL 55.09□□□□□ -1.593e-6■■■■■ 27.1
SFPQP23246 RPAP2-203ENST00000610020 16993 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.613e-6■■■■■ 27.1
SFPQP23246 RAD51B-214ENST00000497460 546 ntTSL 44.97□□□□□ -1.613e-6■■■■■ 27.1
SFPQP23246 RAD51B-213ENST00000492236 417 ntTSL 34.91□□□□□ -1.623e-6■■■■■ 27.1
SFPQP23246 RAD51B-216ENST00000553595 795 ntTSL 34.45□□□□□ -1.73e-6■■■■■ 27.1
SFPQP23246 RPAP2-201ENST00000477322 755 ntTSL 24.32□□□□□ -1.723e-6■■■■■ 27.1
SFPQP23246 MAGI2-208ENST00000522391 4878 ntAPPRIS ALT2 TSL 5 BASIC26.41■■□□□ 1.824e-6■■■■■ 27
SFPQP23246 MAGI2-201ENST00000354212 6880 ntAPPRIS P3 TSL 1 (best) BASIC25.1■■□□□ 1.614e-6■■■■■ 27
SFPQP23246 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.42■■□□□ 1.54e-6■■■■■ 27
SFPQP23246 MAGI2-216ENST00000628997 641 ntTSL 315.23■□□□□ 0.034e-6■■■■■ 27
SFPQP23246 MAGI2-236ENST00000637441 5822 ntTSL 5 BASIC12.08□□□□□ -0.484e-6■■■■■ 27
SFPQP23246 MAGI2-225ENST00000636234 5702 ntTSL 54.79□□□□□ -1.644e-6■■■■■ 27
SFPQP23246 PQLC1-212ENST00000590895 865 ntTSL 318.88■□□□□ 0.611e-7■■■■■ 27
SFPQP23246 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC24.88■■□□□ 1.572e-7■■■■■ 27
SFPQP23246 REXO1-205ENST00000587524 1390 ntTSL 1 (best)23.06■■□□□ 1.282e-7■■■■■ 27
SFPQP23246 PAK4-204ENST00000593480 714 ntTSL 322.22■■□□□ 1.152e-7■■■■■ 27
SFPQP23246 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC21.41■■□□□ 1.022e-7■■■■■ 27
SFPQP23246 PAK4-201ENST00000321944 2555 ntTSL 1 (best) BASIC21.02■□□□□ 0.962e-7■■■■■ 27
SFPQP23246 PAK4-212ENST00000602004 564 ntTSL 420.88■□□□□ 0.932e-7■■■■■ 27
SFPQP23246 PAK4-207ENST00000597766 380 ntTSL 320.39■□□□□ 0.852e-7■■■■■ 27
SFPQP23246 PAK4-209ENST00000599470 1715 ntTSL 1 (best) BASIC20.02■□□□□ 0.82e-7■■■■■ 27
SFPQP23246 PAK4-202ENST00000358301 2739 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.792e-7■■■■■ 27
SFPQP23246 CFLAR-208ENST00000423241 2128 ntAPPRIS P3 TSL 1 (best) BASIC19.97■□□□□ 0.792e-7■■■■■ 27
SFPQP23246 CFLAR-211ENST00000439154 1310 ntTSL 1 (best)18.35■□□□□ 0.532e-7■■■■■ 27
SFPQP23246 CFLAR-204ENST00000341582 2056 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.472e-7■■■■■ 27
SFPQP23246 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC17.7■□□□□ 0.422e-7■■■■■ 27
SFPQP23246 CFLAR-214ENST00000443227 1679 ntTSL 2 BASIC17.63■□□□□ 0.412e-7■■■■■ 27
SFPQP23246 PAK4-205ENST00000593690 3025 ntAPPRIS P1 TSL 1 (best) BASIC17.6■□□□□ 0.412e-7■■■■■ 27
SFPQP23246 CFLAR-205ENST00000342795 1613 ntTSL 5 BASIC17.26■□□□□ 0.352e-7■■■■■ 27
SFPQP23246 CFLAR-206ENST00000395148 4415 ntTSL 1 (best) BASIC16.73■□□□□ 0.272e-7■■■■■ 27
SFPQP23246 CFLAR-203ENST00000341222 1283 ntTSL 1 (best) BASIC16.64■□□□□ 0.252e-7■■■■■ 27
SFPQP23246 CFLAR-213ENST00000441224 655 ntTSL 315.98■□□□□ 0.152e-7■■■■■ 27
SFPQP23246 PTPN12-205ENST00000433369 552 ntTSL 514.09□□□□□ -0.152e-7■■■■■ 27
SFPQP23246 PTPN12-203ENST00000415482 2316 ntTSL 5 BASIC10.66□□□□□ -0.72e-7■■■■■ 27
SFPQP23246 PTPN12-216ENST00000523952 500 ntTSL 410.53□□□□□ -0.722e-7■■■■■ 27
SFPQP23246 EZH2-205ENST00000476773 2572 ntTSL 2 BASIC10.45□□□□□ -0.742e-7■■■■■ 27
SFPQP23246 USP7-203ENST00000542333 1966 ntTSL 29.96□□□□□ -0.812e-7■■■■■ 27
SFPQP23246 CFLAR-201ENST00000309955 14672 ntAPPRIS P3 TSL 1 (best) BASIC9.31□□□□□ -0.922e-7■■■■■ 27
SFPQP23246 CFLAR-210ENST00000433445 435 ntTSL 36.71□□□□□ -1.342e-7■■■■■ 27
SFPQP23246 PTPN12-209ENST00000460731 582 ntTSL 26.16□□□□□ -1.422e-7■■■■■ 27
SFPQP23246 PTPN12-206ENST00000435495 2526 ntTSL 2 BASIC4.6□□□□□ -1.672e-7■■■■■ 27
SFPQP23246 KDM4B-210ENST00000592175 562 ntTSL 418.25■□□□□ 0.516e-6■■■■□ 26.4
SFPQP23246 AATK-202ENST00000374792 4938 ntTSL 222.99■■□□□ 1.272e-6■■■■□ 26.2
SFPQP23246 AATK-201ENST00000326724 5257 ntAPPRIS P3 TSL 5 BASIC19.77■□□□□ 0.762e-6■■■■□ 26.2
SFPQP23246 AATK-206ENST00000572798 407 ntTSL 214.32□□□□□ -0.122e-6■■■■□ 26.2
SFPQP23246 NOL4L-209ENST00000485364 885 ntTSL 1 (best)26.85■■□□□ 1.895e-6■■■■□ 26.1
SFPQP23246 NOL4L-201ENST00000201961 971 ntAPPRIS ALT2 TSL 326.49■■□□□ 1.835e-6■■■■□ 26.1
SFPQP23246 ZC3H3-202ENST00000528401 546 ntTSL 319.97■□□□□ 0.795e-6■■■■□ 26.1
SFPQP23246 ZC3H3-201ENST00000262577 3280 ntAPPRIS P1 TSL 1 (best) BASIC13.68□□□□□ -0.225e-6■■■■□ 26.1
SFPQP23246 LPP-220ENST00000617246 18220 ntAPPRIS P1 TSL 1 (best) BASIC3.76□□□□□ -1.812e-6■■■■□ 26
SFPQP23246 LPP-222ENST00000640853 18277 ntAPPRIS P1 TSL 1 (best) BASIC3.56□□□□□ -1.842e-6■■■■□ 26
SFPQP23246 LPP-221ENST00000618621 18277 ntTSL 1 (best) BASIC3.56□□□□□ -1.842e-6■■■■□ 26
SFPQP23246 UBE2E3-213ENST00000602959 909 ntAPPRIS P1 TSL 5 BASIC26.96■■□□□ 1.914e-7■■■■□ 26
SFPQP23246 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC26.43■■□□□ 1.824e-7■■■■□ 26
SFPQP23246 UBE2E3-206ENST00000602479 752 ntTSL 324.35■■□□□ 1.494e-7■■■■□ 26
SFPQP23246 UBE2E3-207ENST00000602499 744 ntTSL 224.28■■□□□ 1.484e-7■■■■□ 26
SFPQP23246 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC22.97■■□□□ 1.274e-7■■■■□ 26
SFPQP23246 UBE2E3-209ENST00000602710 1556 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.934e-7■■■■□ 26
SFPQP23246 UBE2E3-205ENST00000602475 602 ntTSL 3 BASIC17.33■□□□□ 0.364e-7■■■■□ 26
SFPQP23246 UBE2E3-203ENST00000602291 766 ntTSL 310.68□□□□□ -0.74e-7■■■■□ 26
SFPQP23246 TTC3-216ENST00000479930 8998 ntTSL 1 (best)9.99□□□□□ -0.812e-13■■■■□ 26
SFPQP23246 UBE2E3-210ENST00000602762 340 ntTSL 38.74□□□□□ -1.014e-7■■■■□ 26
SFPQP23246 UBE2E3-204ENST00000602303 654 ntTSL 57.7□□□□□ -1.184e-7■■■■□ 26
SFPQP23246 TTC3-201ENST00000354749 9084 ntAPPRIS P1 TSL 1 (best) BASIC7.69□□□□□ -1.182e-13■■■■□ 26
SFPQP23246 UBE2E3-208ENST00000602632 446 ntTSL 2 BASIC6.59□□□□□ -1.354e-7■■■■□ 26
SFPQP23246 TTC3-204ENST00000399017 10363 ntAPPRIS P1 TSL 1 (best) BASIC5.66□□□□□ -1.52e-13■■■■□ 26
SFPQP23246 UBE2E3-212ENST00000602888 499 ntTSL 25.43□□□□□ -1.544e-7■■■■□ 26
SFPQP23246 MED16-201ENST00000269814 1199 ntTSL 5 BASIC19.6■□□□□ 0.738e-7■■■■□ 25.8
SFPQP23246 MED16-209ENST00000592943 1628 ntTSL 1 (best)19.56■□□□□ 0.728e-7■■■■□ 25.8
Retrieved 100 of 4,991 protein–RNA pairs in 27.4 ms