Protein–RNA interactions for Protein: O96005

CLPTM1, Cleft lip and palate transmembrane protein 1, humanhuman

Predictions only

Length 669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLPTM1O96005 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CLPTM1O96005 GABRA5-203ENST00000400081 2761 ntAPPRIS P1 TSL 5 BASIC25.43■■□□□ 1.66
CLPTM1O96005 CUL4A-202ENST00000375440 2364 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CLPTM1O96005 HOOK2-201ENST00000264827 2603 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CLPTM1O96005 ARMC10-205ENST00000428183 2445 ntTSL 1 (best) BASIC25.43■■□□□ 1.66
CLPTM1O96005 PICK1-201ENST00000356976 2055 ntAPPRIS P1 TSL 1 (best) BASIC25.43■■□□□ 1.66
CLPTM1O96005 HOXB3-201ENST00000311626 2642 ntAPPRIS P1 TSL 1 (best) BASIC25.42■■□□□ 1.66
CLPTM1O96005 COL13A1-212ENST00000520133 1833 ntTSL 5 BASIC25.42■■□□□ 1.66
CLPTM1O96005 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC25.4■■□□□ 1.66
CLPTM1O96005 LIMCH1-211ENST00000509638 1570 ntTSL 1 (best) BASIC25.4■■□□□ 1.66
CLPTM1O96005 WDSUB1-205ENST00000409990 1920 ntAPPRIS P1 TSL 2 BASIC25.4■■□□□ 1.66
CLPTM1O96005 ZNRF2P1-201ENST00000441407 443 ntBASIC25.39■■□□□ 1.66
CLPTM1O96005 FEV-201ENST00000295727 1879 ntAPPRIS P1 TSL 1 (best) BASIC25.38■■□□□ 1.65
CLPTM1O96005 ST6GALNAC6-205ENST00000373146 2460 ntAPPRIS P3 TSL 1 (best) BASIC25.38■■□□□ 1.65
CLPTM1O96005 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC25.38■■□□□ 1.65
CLPTM1O96005 AL136373.1-201ENST00000634804 1449 ntAPPRIS P1 BASIC25.37■■□□□ 1.65
CLPTM1O96005 ZNF787-203ENST00000610935 1925 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CLPTM1O96005 ZNF276-202ENST00000443381 2267 ntAPPRIS P1 TSL 1 (best) BASIC25.37■■□□□ 1.65
CLPTM1O96005 TSPOAP1-AS1-203ENST00000579527 2042 ntTSL 2 BASIC25.35■■□□□ 1.65
CLPTM1O96005 HOXB3-208ENST00000476342 1420 ntAPPRIS P1 TSL 1 (best) BASIC25.35■■□□□ 1.65
CLPTM1O96005 SIRT3-201ENST00000382743 2543 ntAPPRIS P2 TSL 1 (best) BASIC25.34■■□□□ 1.65
CLPTM1O96005 ARL8A-204ENST00000614750 1727 ntTSL 3 BASIC25.34■■□□□ 1.65
CLPTM1O96005 RTN4R-201ENST00000043402 2157 ntAPPRIS P2 TSL 1 (best) BASIC25.33■■□□□ 1.65
CLPTM1O96005 COL13A1-210ENST00000517713 2007 ntAPPRIS ALT2 TSL 5 BASIC25.33■■□□□ 1.65
CLPTM1O96005 CERS2-205ENST00000368954 2505 ntAPPRIS P1 TSL 1 (best) BASIC25.33■■□□□ 1.65
CLPTM1O96005 HOXD8-201ENST00000313173 1917 ntAPPRIS P3 TSL 2 BASIC25.33■■□□□ 1.65
CLPTM1O96005 AGFG1-205ENST00000409979 2089 ntAPPRIS ALT1 TSL 5 BASIC25.32■■□□□ 1.64
CLPTM1O96005 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC25.32■■□□□ 1.64
CLPTM1O96005 PPP1R1A-201ENST00000257905 1826 ntAPPRIS P1 TSL 1 (best) BASIC25.32■■□□□ 1.64
CLPTM1O96005 NPB-202ENST00000573081 2154 ntAPPRIS ALT2 BASIC25.32■■□□□ 1.64
CLPTM1O96005 PLSCR3-214ENST00000619711 2066 ntTSL 5 BASIC25.32■■□□□ 1.64
CLPTM1O96005 ABHD12-201ENST00000339157 2117 ntAPPRIS P1 TSL 2 BASIC25.31■■□□□ 1.64
CLPTM1O96005 MNX1-201ENST00000252971 2174 ntAPPRIS P3 TSL 1 (best) BASIC25.29■■□□□ 1.64
CLPTM1O96005 AC135731.1-201ENST00000569415 2548 ntBASIC25.28■■□□□ 1.64
CLPTM1O96005 MAF-203ENST00000569649 1217 ntAPPRIS ALT2 TSL 5 BASIC25.28■■□□□ 1.64
CLPTM1O96005 PDPK1-203ENST00000389224 2416 ntTSL 2 BASIC25.28■■□□□ 1.64
CLPTM1O96005 PRELID2-202ENST00000394450 1102 ntTSL 1 (best) BASIC25.27■■□□□ 1.64
CLPTM1O96005 ADGRB2-204ENST00000398542 5176 ntTSL 5 BASIC25.27■■□□□ 1.64
CLPTM1O96005 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC25.26■■□□□ 1.63
CLPTM1O96005 RHOQ-201ENST00000238738 2975 ntAPPRIS P1 TSL 1 (best) BASIC25.26■■□□□ 1.63
CLPTM1O96005 EMC10-202ENST00000376918 2014 ntAPPRIS ALT2 TSL 1 (best) BASIC25.25■■□□□ 1.63
CLPTM1O96005 CHCHD4-202ENST00000396914 1405 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CLPTM1O96005 ZNF775-201ENST00000329630 2257 ntAPPRIS P1 TSL 1 (best) BASIC25.24■■□□□ 1.63
CLPTM1O96005 TMEM185A-207ENST00000600449 2840 ntAPPRIS P1 TSL 1 (best) BASIC25.23■■□□□ 1.63
CLPTM1O96005 DHRS13-202ENST00000394901 2037 ntTSL 1 (best) BASIC25.22■■□□□ 1.63
CLPTM1O96005 AMN-201ENST00000299155 1907 ntAPPRIS P2 TSL 1 (best) BASIC25.22■■□□□ 1.63
CLPTM1O96005 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC25.21■■□□□ 1.63
CLPTM1O96005 AP003068.2-202ENST00000526623 1662 ntTSL 2 BASIC25.21■■□□□ 1.63
CLPTM1O96005 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC25.2■■□□□ 1.62
CLPTM1O96005 HAND2-201ENST00000359562 2780 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CLPTM1O96005 IL17D-201ENST00000304920 1861 ntAPPRIS P1 TSL 1 (best) BASIC25.19■■□□□ 1.62
CLPTM1O96005 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC25.18■■□□□ 1.62
CLPTM1O96005 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.18■■□□□ 1.62
CLPTM1O96005 AC120057.4-201ENST00000624722 1615 ntBASIC25.17■■□□□ 1.62
CLPTM1O96005 ARHGAP22-202ENST00000374170 2107 ntTSL 5 BASIC25.17■■□□□ 1.62
CLPTM1O96005 AC105285.1-201ENST00000500914 2036 ntTSL 1 (best) BASIC25.16■■□□□ 1.62
CLPTM1O96005 TMEM158-201ENST00000503771 1813 ntAPPRIS P1 BASIC25.16■■□□□ 1.62
CLPTM1O96005 BMP7-204ENST00000450594 1857 ntTSL 2 BASIC25.15■■□□□ 1.62
CLPTM1O96005 COL13A1-213ENST00000520267 2276 ntAPPRIS ALT2 TSL 5 BASIC25.15■■□□□ 1.62
CLPTM1O96005 CYP26C1-201ENST00000285949 1569 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CLPTM1O96005 RTN2-202ENST00000344680 2063 ntAPPRIS P1 TSL 1 (best) BASIC25.15■■□□□ 1.62
CLPTM1O96005 CCM2-218ENST00000541586 1719 ntTSL 3 BASIC25.15■■□□□ 1.62
CLPTM1O96005 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC25.14■■□□□ 1.61
CLPTM1O96005 LMO2-201ENST00000257818 2294 ntTSL 1 (best) BASIC25.14■■□□□ 1.61
CLPTM1O96005 MFSD12-201ENST00000355415 2124 ntAPPRIS P3 TSL 1 (best) BASIC25.13■■□□□ 1.61
CLPTM1O96005 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC25.13■■□□□ 1.61
CLPTM1O96005 BTBD7-201ENST00000298896 2621 ntTSL 1 (best) BASIC25.12■■□□□ 1.61
CLPTM1O96005 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLPTM1O96005 SLC2A4RG-201ENST00000266077 1731 ntAPPRIS P1 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLPTM1O96005 NPDC1-201ENST00000371600 2187 ntAPPRIS ALT2 TSL 1 (best) BASIC25.11■■□□□ 1.61
CLPTM1O96005 TRAPPC10-202ENST00000380221 1763 ntTSL 1 (best) BASIC25.1■■□□□ 1.61
CLPTM1O96005 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC25.1■■□□□ 1.61
CLPTM1O96005 WHRN-203ENST00000374057 1718 ntTSL 2 BASIC25.09■■□□□ 1.61
CLPTM1O96005 ZNF513-201ENST00000323703 2139 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CLPTM1O96005 THAP4-204ENST00000407315 2367 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CLPTM1O96005 GXYLT1-201ENST00000280876 1937 ntAPPRIS ALT2 TSL 1 (best) BASIC25.09■■□□□ 1.61
CLPTM1O96005 ARTN-201ENST00000372354 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CLPTM1O96005 LMTK3-202ENST00000600059 5113 ntAPPRIS ALT2 TSL 2 BASIC25.07■■□□□ 1.6
CLPTM1O96005 EMID1-203ENST00000404820 2118 ntTSL 5 BASIC25.07■■□□□ 1.6
CLPTM1O96005 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CLPTM1O96005 SP8-201ENST00000361443 1714 ntAPPRIS P3 TSL 1 (best) BASIC25.06■■□□□ 1.6
CLPTM1O96005 SIGMAR1-203ENST00000378892 1743 ntTSL 2 BASIC25.06■■□□□ 1.6
CLPTM1O96005 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC25.06■■□□□ 1.6
CLPTM1O96005 AC142086.6-201ENST00000621154 1765 ntBASIC25.05■■□□□ 1.6
CLPTM1O96005 DEAF1-201ENST00000382409 2500 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CLPTM1O96005 JMJD8-216ENST00000609261 1901 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CLPTM1O96005 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CLPTM1O96005 TSPAN33-201ENST00000486685 1863 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CLPTM1O96005 TESK1-201ENST00000336395 2421 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CLPTM1O96005 FAM19A5-203ENST00000402357 1508 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CLPTM1O96005 AHSA2-201ENST00000357022 2437 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CLPTM1O96005 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC25.01■■□□□ 1.59
CLPTM1O96005 AC079848.1-201ENST00000511301 327 ntTSL 3 BASIC25.01■■□□□ 1.59
CLPTM1O96005 FGF2-203ENST00000614010 867 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CLPTM1O96005 MTCH1-201ENST00000373616 2006 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CLPTM1O96005 DRD4-201ENST00000176183 1375 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CLPTM1O96005 ANKRD65-203ENST00000454272 1506 ntAPPRIS P1 TSL 5 BASIC25.01■■□□□ 1.59
CLPTM1O96005 DPF1-202ENST00000412732 2303 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CLPTM1O96005 MAGI2-211ENST00000535697 6146 ntTSL 5 BASIC25■■□□□ 1.59
CLPTM1O96005 SYNGR1-202ENST00000318801 1361 ntTSL 1 (best) BASIC25■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 37.3 ms