Protein–RNA interactions for Protein: A6NKD9

CCDC85C, Coiled-coil domain-containing protein 85C, humanhuman

Predictions only

Length 419 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC85CA6NKD9 TCEA2-202ENST00000343484 1235 ntAPPRIS P1 TSL 1 (best) BASIC31.81■■■□□ 2.68
CCDC85CA6NKD9 NAA50-207ENST00000493900 962 ntAPPRIS ALT1 TSL 2 BASIC31.8■■■□□ 2.68
CCDC85CA6NKD9 MISP3-201ENST00000269720 1424 ntAPPRIS ALT2 TSL 5 BASIC31.78■■■□□ 2.68
CCDC85CA6NKD9 AC116407.1-201ENST00000398832 1599 ntTSL 2 BASIC31.77■■■□□ 2.68
CCDC85CA6NKD9 GADD45A-205ENST00000617962 1142 ntTSL 1 (best) BASIC31.76■■■□□ 2.67
CCDC85CA6NKD9 CCM2-219ENST00000544363 1620 ntTSL 3 BASIC31.75■■■□□ 2.67
CCDC85CA6NKD9 ARRDC1-201ENST00000371421 1586 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC85CA6NKD9 VAX2-201ENST00000234392 1147 ntAPPRIS P1 TSL 1 (best) BASIC31.74■■■□□ 2.67
CCDC85CA6NKD9 AC234582.1-201ENST00000447623 923 ntTSL 5 BASIC31.74■■■□□ 2.67
CCDC85CA6NKD9 TRIM52-AS1-203ENST00000509252 529 ntTSL 3 BASIC31.73■■■□□ 2.67
CCDC85CA6NKD9 ANKS1B-202ENST00000333732 1675 ntTSL 2 BASIC31.73■■■□□ 2.67
CCDC85CA6NKD9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC85CA6NKD9 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC31.72■■■□□ 2.67
CCDC85CA6NKD9 CLEC3B-202ENST00000428034 752 ntTSL 2 BASIC31.7■■■□□ 2.67
CCDC85CA6NKD9 DDN-AS1-203ENST00000552284 934 ntTSL 3 BASIC31.69■■■□□ 2.66
CCDC85CA6NKD9 AC021231.2-201ENST00000594613 730 ntBASIC31.69■■■□□ 2.66
CCDC85CA6NKD9 C16orf95-206ENST00000618367 974 ntAPPRIS ALT2 TSL 2 BASIC31.69■■■□□ 2.66
CCDC85CA6NKD9 BCL7B-202ENST00000411832 1458 ntTSL 2 BASIC31.69■■■□□ 2.66
CCDC85CA6NKD9 PARD6A-201ENST00000219255 1248 ntAPPRIS P3 TSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC85CA6NKD9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC31.68■■■□□ 2.66
CCDC85CA6NKD9 NME2-205ENST00000512737 826 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
CCDC85CA6NKD9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC31.68■■■□□ 2.66
CCDC85CA6NKD9 FAAP20-202ENST00000378546 729 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
CCDC85CA6NKD9 PPP1R14B-201ENST00000309318 982 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
CCDC85CA6NKD9 HSD17B1-201ENST00000225929 1265 ntAPPRIS ALT2 TSL 2 BASIC31.64■■■□□ 2.66
CCDC85CA6NKD9 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC31.64■■■□□ 2.66
CCDC85CA6NKD9 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC31.64■■■□□ 2.66
CCDC85CA6NKD9 CCDC149-203ENST00000502801 1079 ntTSL 1 (best) BASIC31.63■■■□□ 2.65
CCDC85CA6NKD9 U2AF1-201ENST00000291552 962 ntAPPRIS P3 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC85CA6NKD9 U2AF1L5-202ENST00000619610 813 ntAPPRIS ALT2 TSL 1 (best) BASIC31.61■■■□□ 2.65
CCDC85CA6NKD9 GRK2-204ENST00000526285 1458 ntTSL 5 BASIC31.6■■■□□ 2.65
CCDC85CA6NKD9 C11orf84-201ENST00000294244 2024 ntAPPRIS P1 TSL 1 (best) BASIC31.6■■■□□ 2.65
CCDC85CA6NKD9 UBALD1-203ENST00000587649 707 ntTSL 3 BASIC31.6■■■□□ 2.65
CCDC85CA6NKD9 MFAP2-202ENST00000375535 1260 ntTSL 1 (best) BASIC31.59■■■□□ 2.65
CCDC85CA6NKD9 RASSF7-201ENST00000397582 1731 ntAPPRIS ALT2 TSL 2 BASIC31.58■■■□□ 2.65
CCDC85CA6NKD9 VEGFA-208ENST00000417285 1081 ntAPPRIS ALT2 TSL 1 (best) BASIC31.58■■■□□ 2.65
CCDC85CA6NKD9 ABHD17AP5-201ENST00000580133 923 ntBASIC31.58■■■□□ 2.65
CCDC85CA6NKD9 CR559946.2-201ENST00000623684 991 ntBASIC31.58■■■□□ 2.65
CCDC85CA6NKD9 P2RX2-203ENST00000350048 1344 ntTSL 1 (best) BASIC31.56■■■□□ 2.64
CCDC85CA6NKD9 TSEN34-203ENST00000396388 1349 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC85CA6NKD9 MRPL51-201ENST00000229238 1234 ntAPPRIS P1 TSL 1 (best) BASIC31.55■■■□□ 2.64
CCDC85CA6NKD9 AGPS-202ENST00000409888 815 ntTSL 4 BASIC31.55■■■□□ 2.64
CCDC85CA6NKD9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC31.55■■■□□ 2.64
CCDC85CA6NKD9 RPS2-209ENST00000529806 993 ntTSL 3 BASIC31.54■■■□□ 2.64
CCDC85CA6NKD9 Z97634.1-201ENST00000412293 1715 ntTSL 1 (best) BASIC31.52■■■□□ 2.64
CCDC85CA6NKD9 C16orf95-205ENST00000567970 1031 ntAPPRIS ALT2 TSL 5 BASIC31.52■■■□□ 2.64
CCDC85CA6NKD9 PPP1CC-202ENST00000340766 1472 ntTSL 2 BASIC31.52■■■□□ 2.64
CCDC85CA6NKD9 DCUN1D5-201ENST00000260247 1337 ntAPPRIS P1 TSL 1 (best) BASIC31.51■■■□□ 2.64
CCDC85CA6NKD9 RP9P-201ENST00000381639 1303 ntTSL 1 (best) BASIC31.51■■■□□ 2.64
CCDC85CA6NKD9 RARRES2P2-201ENST00000394842 485 ntBASIC31.51■■■□□ 2.63
CCDC85CA6NKD9 LANCL3-203ENST00000614025 1469 ntTSL 2 BASIC31.51■■■□□ 2.63
CCDC85CA6NKD9 DUX4L11-201ENST00000611504 1267 ntBASIC31.48■■■□□ 2.63
CCDC85CA6NKD9 DUX4L12-201ENST00000614593 1267 ntBASIC31.48■■■□□ 2.63
CCDC85CA6NKD9 DUX4L14-201ENST00000621227 1267 ntBASIC31.48■■■□□ 2.63
CCDC85CA6NKD9 INPP5A-202ENST00000368593 1432 ntTSL 1 (best) BASIC31.48■■■□□ 2.63
CCDC85CA6NKD9 MAPK1-202ENST00000398822 1487 ntAPPRIS P1 TSL 1 (best) BASIC31.47■■■□□ 2.63
CCDC85CA6NKD9 HINT2-201ENST00000259667 628 ntAPPRIS P1 TSL 1 (best) BASIC31.46■■■□□ 2.63
CCDC85CA6NKD9 CIB2-204ENST00000557846 934 ntTSL 3 BASIC31.46■■■□□ 2.63
CCDC85CA6NKD9 MXD3-208ENST00000513063 861 ntAPPRIS P1 TSL 5 BASIC31.42■■■□□ 2.62
CCDC85CA6NKD9 PSMG4-202ENST00000380305 489 ntTSL 5 BASIC31.41■■■□□ 2.62
CCDC85CA6NKD9 PCYT2-205ENST00000570391 1857 ntTSL 2 BASIC31.4■■■□□ 2.62
CCDC85CA6NKD9 PIGX-201ENST00000296333 953 ntAPPRIS ALT2 TSL 2 BASIC31.37■■■□□ 2.61
CCDC85CA6NKD9 AC068134.2-201ENST00000437095 576 ntTSL 3 BASIC31.37■■■□□ 2.61
CCDC85CA6NKD9 VEGFA-231ENST00000640499 1188 ntAPPRIS P3 TSL 1 (best) BASIC31.37■■■□□ 2.61
CCDC85CA6NKD9 RAB43-207ENST00000476465 1627 ntTSL 3 BASIC31.37■■■□□ 2.61
CCDC85CA6NKD9 MAD2L2-205ENST00000376669 864 ntTSL 3 BASIC31.36■■■□□ 2.61
CCDC85CA6NKD9 MAPK3-205ENST00000395202 1008 ntTSL 1 (best) BASIC31.36■■■□□ 2.61
CCDC85CA6NKD9 STARD10-220ENST00000545082 1085 ntTSL 3 BASIC31.36■■■□□ 2.61
CCDC85CA6NKD9 C5orf66-AS1-201ENST00000507035 843 ntTSL 2 BASIC31.34■■■□□ 2.61
CCDC85CA6NKD9 LINC01971-201ENST00000617888 1048 ntBASIC31.32■■■□□ 2.6
CCDC85CA6NKD9 CDKN3-202ENST00000335183 893 ntAPPRIS P2 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC85CA6NKD9 DNLZ-201ENST00000371738 724 ntAPPRIS P1 TSL 1 (best) BASIC31.31■■■□□ 2.6
CCDC85CA6NKD9 CDKN3-211ENST00000611205 874 ntAPPRIS ALT2 TSL 5 BASIC31.31■■■□□ 2.6
CCDC85CA6NKD9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC31.29■■■□□ 2.6
CCDC85CA6NKD9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC31.27■■■□□ 2.6
CCDC85CA6NKD9 METRNL-202ENST00000570778 967 ntTSL 5 BASIC31.27■■■□□ 2.6
CCDC85CA6NKD9 AC012354.3-201ENST00000623734 483 ntBASIC31.25■■■□□ 2.59
CCDC85CA6NKD9 MRPL9-201ENST00000368829 882 ntAPPRIS ALT2 TSL 2 BASIC31.24■■■□□ 2.59
CCDC85CA6NKD9 AL589765.4-201ENST00000512280 382 ntTSL 3 BASIC31.24■■■□□ 2.59
CCDC85CA6NKD9 TERF2-207ENST00000567296 1129 ntTSL 1 (best) BASIC31.24■■■□□ 2.59
CCDC85CA6NKD9 AC019069.1-201ENST00000610008 1333 ntBASIC31.24■■■□□ 2.59
CCDC85CA6NKD9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC85CA6NKD9 GTF3C4-202ENST00000483873 1417 ntTSL 3 BASIC31.23■■■□□ 2.59
CCDC85CA6NKD9 DTNBP1-212ENST00000622898 1305 ntTSL 1 (best) BASIC31.23■■■□□ 2.59
CCDC85CA6NKD9 AURKAIP1-203ENST00000338370 1072 ntAPPRIS P1 TSL 1 (best) BASIC31.21■■■□□ 2.59
CCDC85CA6NKD9 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC31.21■■■□□ 2.59
CCDC85CA6NKD9 GIPC1-202ENST00000393028 1483 ntTSL 3 BASIC31.19■■■□□ 2.58
CCDC85CA6NKD9 AC018358.1-201ENST00000631079 1402 ntBASIC31.18■■■□□ 2.58
CCDC85CA6NKD9 H2AFV-204ENST00000350771 687 ntTSL 2 BASIC31.16■■■□□ 2.58
CCDC85CA6NKD9 CRNDE-206ENST00000559432 587 ntTSL 3 BASIC31.16■■■□□ 2.58
CCDC85CA6NKD9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC31.15■■■□□ 2.58
CCDC85CA6NKD9 UBE2A-207ENST00000628549 934 ntTSL 2 BASIC31.14■■■□□ 2.58
CCDC85CA6NKD9 C1orf232-201ENST00000634842 643 ntAPPRIS P5 TSL 5 BASIC31.13■■■□□ 2.57
CCDC85CA6NKD9 BRF1-213ENST00000548421 1452 ntTSL 1 (best) BASIC31.12■■■□□ 2.57
CCDC85CA6NKD9 ECI1-207ENST00000570258 1512 ntAPPRIS ALT2 TSL 5 BASIC31.12■■■□□ 2.57
CCDC85CA6NKD9 GSTP1-202ENST00000398606 965 ntAPPRIS P1 TSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC85CA6NKD9 PTPMT1-203ENST00000426530 1014 ntTSL 1 (best) BASIC31.11■■■□□ 2.57
CCDC85CA6NKD9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC31.1■■■□□ 2.57
CCDC85CA6NKD9 ARL6IP4-211ENST00000454885 1318 ntAPPRIS ALT2 TSL 1 (best) BASIC31.09■■■□□ 2.57
CCDC85CA6NKD9 MRPL23-202ENST00000381519 643 ntAPPRIS P1 TSL 3 BASIC31.09■■■□□ 2.57
Retrieved 100 of 98,524 protein–RNA pairs in 13.1 ms