Protein–RNA interactions for Protein: Q9Y3B2

EXOSC1, Exosome complex component CSL4, humanhuman

Known RBP Predictions only

Length 195 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
EXOSC1Q9Y3B2 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 ZNF497-202ENST00000425453 2261 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 KLHL17-205ENST00000622660 1950 ntTSL 5 BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.37■□□□□ 0.69
EXOSC1Q9Y3B2 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 BAZ1B-202ENST00000404251 5428 ntAPPRIS P1 TSL 2 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 FEM1AP4-201ENST00000443167 1987 ntBASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 TK2-202ENST00000417693 1046 ntTSL 2 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 PTPRF-216ENST00000617451 1129 ntTSL 5 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 AC119427.1-201ENST00000633182 556 ntTSL 4 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 CNTD2-202ENST00000430325 1817 ntAPPRIS P2 TSL 2 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 SSUH2-217ENST00000544814 1636 ntAPPRIS ALT2 TSL 2 BASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 AC004687.1-201ENST00000579003 1625 ntBASIC19.36■□□□□ 0.69
EXOSC1Q9Y3B2 AL359710.1-201ENST00000427039 1544 ntTSL 2 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 ST3GAL3-207ENST00000353126 1969 ntTSL 5 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 CENPB-201ENST00000379751 2840 ntAPPRIS P1 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 PVT1_1.1-201ENST00000615125 194 ntBASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 IGFBP1-201ENST00000275525 1653 ntAPPRIS P2 TSL 1 (best) BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 ME2-206ENST00000638410 2289 ntTSL 5 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 ME2-210ENST00000639255 2262 ntTSL 5 BASIC19.35■□□□□ 0.69
EXOSC1Q9Y3B2 APPL2-201ENST00000258530 3239 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 ARSA-202ENST00000356098 1895 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 TTYH1-203ENST00000376531 1763 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC19.34■□□□□ 0.69
EXOSC1Q9Y3B2 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 ESR2-204ENST00000353772 2454 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.69
EXOSC1Q9Y3B2 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 AC243829.1-202ENST00000618848 486 ntTSL 3 BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 AMZ2-219ENST00000612294 1498 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 PRSS33-202ENST00000570702 1676 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 ZNF428-201ENST00000300811 1412 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
EXOSC1Q9Y3B2 RBM34-201ENST00000408888 2054 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 DMRT2-203ENST00000358146 1965 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 B4GALT5-201ENST00000371711 4722 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 CTNND2-201ENST00000304623 5481 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
EXOSC1Q9Y3B2 LINC01521-201ENST00000504184 1943 ntBASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 KCNN1-204ENST00000615435 1691 ntAPPRIS ALT1 TSL 5 BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 PDK3-201ENST00000379162 1809 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 BRI3-201ENST00000297290 780 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 BEX3-202ENST00000372634 753 ntTSL 2 BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 NREP-216ENST00000508870 540 ntAPPRIS P1 TSL 4 BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
EXOSC1Q9Y3B2 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 19 ms