Protein–RNA interactions for Protein: Q99569

PKP4, Plakophilin-4, humanhuman

Predictions only

Length 1,192 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PKP4Q99569 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC21.12■□□□□ 0.97
PKP4Q99569 CKLF-205ENST00000417030 628 ntAPPRIS ALT2 TSL 4 BASIC21.12■□□□□ 0.97
PKP4Q99569 AC091305.1-201ENST00000479476 895 ntBASIC21.12■□□□□ 0.97
PKP4Q99569 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKP4Q99569 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKP4Q99569 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKP4Q99569 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.12■□□□□ 0.97
PKP4Q99569 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PKP4Q99569 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PKP4Q99569 AQP6-201ENST00000315520 1398 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PKP4Q99569 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PKP4Q99569 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PKP4Q99569 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 ADAP2-204ENST00000580525 1598 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.11■□□□□ 0.97
PKP4Q99569 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 TSSK1B-201ENST00000390666 2478 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PKP4Q99569 IGHV3-19-201ENST00000521488 291 ntBASIC21.11■□□□□ 0.97
PKP4Q99569 AC142381.2-201ENST00000566120 298 ntBASIC21.11■□□□□ 0.97
PKP4Q99569 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC21.11■□□□□ 0.97
PKP4Q99569 SMUG1-215ENST00000508394 1697 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PKP4Q99569 XPA-201ENST00000375128 1417 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 CERS5-201ENST00000317551 2051 ntAPPRIS P3 TSL 2 BASIC21.11■□□□□ 0.97
PKP4Q99569 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PKP4Q99569 CACNA1H-210ENST00000638323 8048 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
PKP4Q99569 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKP4Q99569 AP1S1-201ENST00000337619 1306 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKP4Q99569 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC21.1■□□□□ 0.97
PKP4Q99569 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC21.1■□□□□ 0.97
PKP4Q99569 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKP4Q99569 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC21.1■□□□□ 0.97
PKP4Q99569 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC21.1■□□□□ 0.97
PKP4Q99569 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKP4Q99569 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
PKP4Q99569 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
PKP4Q99569 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC21.1■□□□□ 0.97
PKP4Q99569 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC21.09■□□□□ 0.97
PKP4Q99569 NEURL4-201ENST00000315614 5182 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
PKP4Q99569 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKP4Q99569 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
PKP4Q99569 INS-202ENST00000381330 597 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
PKP4Q99569 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC21.09■□□□□ 0.97
PKP4Q99569 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKP4Q99569 MADCAM1-208ENST00000621286 1203 ntAPPRIS ALT2 TSL 5 BASIC21.09■□□□□ 0.97
PKP4Q99569 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC21.09■□□□□ 0.97
PKP4Q99569 ZNF410-206ENST00000540593 1722 ntTSL 2 BASIC21.09■□□□□ 0.97
PKP4Q99569 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
PKP4Q99569 TSPY26P-201ENST00000476365 1326 ntBASIC21.08■□□□□ 0.97
PKP4Q99569 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 AC079834.2-201ENST00000609776 1949 ntBASIC21.08■□□□□ 0.97
PKP4Q99569 YIF1B-202ENST00000337679 1257 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.08■□□□□ 0.97
PKP4Q99569 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 HSPE1-203ENST00000409729 478 ntTSL 2 BASIC21.08■□□□□ 0.97
PKP4Q99569 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
PKP4Q99569 AICDA-202ENST00000537228 667 ntTSL 5 BASIC21.08■□□□□ 0.97
PKP4Q99569 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
PKP4Q99569 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.08■□□□□ 0.96
PKP4Q99569 FHL3-201ENST00000373016 1647 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKP4Q99569 AZIN2-204ENST00000373443 2048 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKP4Q99569 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.07■□□□□ 0.96
PKP4Q99569 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC21.07■□□□□ 0.96
PKP4Q99569 DPP7-201ENST00000371579 1590 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKP4Q99569 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKP4Q99569 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC21.07■□□□□ 0.96
PKP4Q99569 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC21.07■□□□□ 0.96
PKP4Q99569 BBC3-202ENST00000341983 1538 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
PKP4Q99569 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC21.07■□□□□ 0.96
PKP4Q99569 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
PKP4Q99569 BASP1-203ENST00000616743 1711 ntAPPRIS P1 TSL 3 BASIC21.07■□□□□ 0.96
PKP4Q99569 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PKP4Q99569 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC21.06■□□□□ 0.96
PKP4Q99569 AC092053.2-201ENST00000640557 1818 ntBASIC21.06■□□□□ 0.96
PKP4Q99569 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.06■□□□□ 0.96
PKP4Q99569 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC21.06■□□□□ 0.96
PKP4Q99569 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PKP4Q99569 OR7E47P-201ENST00000546390 1422 ntBASIC21.06■□□□□ 0.96
PKP4Q99569 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PKP4Q99569 PLPP5-201ENST00000419686 794 ntTSL 2 BASIC21.06■□□□□ 0.96
PKP4Q99569 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.06■□□□□ 0.96
PKP4Q99569 FBXO33-202ENST00000554190 534 ntTSL 3 BASIC21.06■□□□□ 0.96
PKP4Q99569 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
PKP4Q99569 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PKP4Q99569 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
PKP4Q99569 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
PKP4Q99569 C22orf34-203ENST00000405854 1593 ntTSL 5 BASIC21.06■□□□□ 0.96
PKP4Q99569 MFSD7-209ENST00000515118 1556 ntTSL 5 BASIC21.06■□□□□ 0.96
PKP4Q99569 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
PKP4Q99569 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
PKP4Q99569 C11orf63-201ENST00000227349 3147 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
PKP4Q99569 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
PKP4Q99569 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.05■□□□□ 0.96
PKP4Q99569 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.05■□□□□ 0.96
PKP4Q99569 HYI-206ENST00000372434 1025 ntTSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms