Protein–RNA interactions for Protein: Q96S90

LYSMD1, LysM and putative peptidoglycan-binding domain-containing protein 1, humanhuman

Predictions only

Length 227 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LYSMD1Q96S90 IGFBP1-202ENST00000457280 1601 ntAPPRIS ALT2 TSL 5 BASIC21.66■■□□□ 1.06
LYSMD1Q96S90 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 CMPK2-202ENST00000404168 2042 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 TBC1D22A-206ENST00000407381 1949 ntTSL 5 BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 RPUSD3-206ENST00000433535 1178 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.65■■□□□ 1.06
LYSMD1Q96S90 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.64■■□□□ 1.06
LYSMD1Q96S90 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC21.64■■□□□ 1.06
LYSMD1Q96S90 AC242852.2-201ENST00000615738 1807 ntBASIC21.64■■□□□ 1.06
LYSMD1Q96S90 CNN3-201ENST00000370206 2165 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.06
LYSMD1Q96S90 CCDC160-201ENST00000370809 1299 ntAPPRIS P1 TSL 5 BASIC21.64■■□□□ 1.05
LYSMD1Q96S90 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LYSMD1Q96S90 RNF208-201ENST00000391553 1077 ntAPPRIS P1 BASIC21.64■■□□□ 1.05
LYSMD1Q96S90 ORMDL1-202ENST00000392349 1137 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
LYSMD1Q96S90 C16orf86-201ENST00000403458 1267 ntAPPRIS P2 TSL 1 (best) BASIC21.64■■□□□ 1.05
LYSMD1Q96S90 AC133561.1-201ENST00000568600 2415 ntBASIC21.64■■□□□ 1.05
LYSMD1Q96S90 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 GUSBP5-202ENST00000510805 1989 ntBASIC21.63■■□□□ 1.05
LYSMD1Q96S90 RPL8-201ENST00000262584 1041 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 CRB3-202ENST00000356762 733 ntAPPRIS P4 TSL 1 (best) BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 BX005040.4-201ENST00000637145 1518 ntBASIC21.63■■□□□ 1.05
LYSMD1Q96S90 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
LYSMD1Q96S90 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 AP2S1-203ENST00000593442 636 ntTSL 2 BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 POLR2E-214ENST00000619917 932 ntTSL 5 BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 ALDH6A1-201ENST00000350259 1869 ntAPPRIS ALT2 TSL 2 BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 CAPG-201ENST00000263867 1442 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.62■■□□□ 1.05
LYSMD1Q96S90 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 AKR7A2-201ENST00000235835 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 CCKBR-206ENST00000532715 1734 ntTSL 3 BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 TERT-206ENST00000508104 2486 ntTSL 5 BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 PRKCQ-AS1-202ENST00000445427 1133 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 AL034346.1-201ENST00000568244 1277 ntBASIC21.61■■□□□ 1.05
LYSMD1Q96S90 MRM1-203ENST00000612760 1284 ntTSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 NIPSNAP1-201ENST00000216121 2237 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 RITA1-202ENST00000549621 2041 ntAPPRIS P1 TSL 2 BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 NOX4-209ENST00000527626 1774 ntTSL 2 BASIC21.61■■□□□ 1.05
LYSMD1Q96S90 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 RALGPS1-207ENST00000394022 1672 ntTSL 2 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 ANKRD44-204ENST00000409919 1622 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 MCRIP1-204ENST00000570507 765 ntTSL 2 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 MCRIP1-208ENST00000575061 618 ntTSL 5 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 ASL-203ENST00000380839 1765 ntTSL 5 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 PRR16-202ENST00000407149 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
LYSMD1Q96S90 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
LYSMD1Q96S90 GNB2-209ENST00000436220 1479 ntTSL 5 BASIC21.59■■□□□ 1.05
LYSMD1Q96S90 ECEL1P1-201ENST00000373592 1742 ntBASIC21.59■■□□□ 1.05
LYSMD1Q96S90 AC123595.1-201ENST00000440769 1046 ntBASIC21.59■■□□□ 1.05
LYSMD1Q96S90 YBX1P1-201ENST00000445822 960 ntBASIC21.59■■□□□ 1.05
LYSMD1Q96S90 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC21.59■■□□□ 1.05
LYSMD1Q96S90 TPRG1LP1-201ENST00000598702 760 ntBASIC21.59■■□□□ 1.05
LYSMD1Q96S90 MIR6084-201ENST00000622012 110 ntBASIC21.59■■□□□ 1.05
LYSMD1Q96S90 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC21.59■■□□□ 1.05
LYSMD1Q96S90 RNF166-202ENST00000537718 1525 ntTSL 2 BASIC21.59■■□□□ 1.05
LYSMD1Q96S90 TPM1-204ENST00000334895 1637 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 EPB41L4B-202ENST00000374566 5800 ntAPPRIS P4 TSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 PDLIM2-216ENST00000464275 1995 ntTSL 2 BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 C1QL1-201ENST00000253407 1295 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 ORAI3-202ENST00000562699 628 ntTSL 2 BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
LYSMD1Q96S90 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC21.58■■□□□ 1.04
LYSMD1Q96S90 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LYSMD1Q96S90 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LYSMD1Q96S90 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
LYSMD1Q96S90 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 62.9 ms