Protein–RNA interactions for Protein: Q8N6Y0

USHBP1, Usher syndrome type-1C protein-binding protein 1, humanhuman

Predictions only

Length 703 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USHBP1Q8N6Y0 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
USHBP1Q8N6Y0 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC28.83■■■□□ 2.21
USHBP1Q8N6Y0 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC28.83■■■□□ 2.21
USHBP1Q8N6Y0 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC28.83■■■□□ 2.21
USHBP1Q8N6Y0 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC28.83■■■□□ 2.2
USHBP1Q8N6Y0 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 MAZ-216ENST00000616501 991 ntTSL 5 BASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 AL050303.2-201ENST00000619798 666 ntBASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 KRT87P-202ENST00000534226 1464 ntBASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 ZBTB10-204ENST00000455036 5458 ntAPPRIS P3 TSL 2 BASIC28.82■■■□□ 2.2
USHBP1Q8N6Y0 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 PCOLCE2-201ENST00000295992 2021 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 STAP2-206ENST00000600324 1508 ntAPPRIS P3 TSL 2 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 SMCO4-201ENST00000298966 1104 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 RHOD-201ENST00000308831 1129 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 SFTPC-205ENST00000521315 1046 ntAPPRIS ALT1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 CD24-202ENST00000610952 802 ntAPPRIS P3 TSL 2 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 FOXG1-201ENST00000313071 4890 ntAPPRIS P1 BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC28.81■■■□□ 2.2
USHBP1Q8N6Y0 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 AC025164.2-201ENST00000501008 1898 ntTSL 5 BASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 KRT18P11-201ENST00000435214 1283 ntBASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 UBE2DNL-204ENST00000602536 740 ntBASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 THRA-202ENST00000394121 2260 ntTSL 2 BASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 PIP5K1C-203ENST00000539785 2289 ntAPPRIS ALT2 TSL 2 BASIC28.8■■■□□ 2.2
USHBP1Q8N6Y0 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 TMEM185A-208ENST00000611119 2662 ntTSL 2 BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC28.79■■■□□ 2.2
USHBP1Q8N6Y0 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 MAGI2-AS3-209ENST00000448195 774 ntTSL 3 BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 AC106820.5-201ENST00000566085 789 ntTSL 3 BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 DONSON-204ENST00000432378 1618 ntTSL 5 BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 DACT2-203ENST00000607983 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC28.78■■■□□ 2.2
USHBP1Q8N6Y0 AC009237.3-201ENST00000393279 1427 ntBASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 AC092068.2-201ENST00000590491 1708 ntBASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 CDC16-203ENST00000356221 2203 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 MRPL38-201ENST00000309352 1888 ntAPPRIS P1 TSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 CITED1-201ENST00000246139 1231 ntAPPRIS P3 TSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 METTL26-203ENST00000397664 604 ntTSL 2 BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 GAMT-205ENST00000640762 751 ntTSL 5 BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC28.77■■■□□ 2.2
USHBP1Q8N6Y0 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC28.76■■■□□ 2.2
USHBP1Q8N6Y0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 DCTN3-202ENST00000341694 899 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 DCTN3-205ENST00000378916 773 ntTSL 2 BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC28.76■■■□□ 2.19
USHBP1Q8N6Y0 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 RORB-AS1-201ENST00000417576 1178 ntTSL 5 BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 TSPAN4-206ENST00000397408 1430 ntAPPRIS P1 TSL 2 BASIC28.75■■■□□ 2.19
USHBP1Q8N6Y0 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 NDEL1-201ENST00000334527 2372 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 GPX1P1-201ENST00000388829 606 ntBASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 DUX4L16-201ENST00000555130 1264 ntBASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 LINC01960-201ENST00000563759 1884 ntBASIC28.74■■■□□ 2.19
USHBP1Q8N6Y0 GTF2IP1-204ENST00000616377 2632 ntTSL 2 BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 EPHA8-202ENST00000374644 1802 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 ABHD17AP1-201ENST00000358206 933 ntBASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 PARP1-202ENST00000366792 553 ntTSL 3 BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC28.73■■■□□ 2.19
USHBP1Q8N6Y0 RAD21L1-202ENST00000402452 1707 ntTSL 5 BASIC28.73■■■□□ 2.19
Retrieved 100 of 98,524 protein–RNA pairs in 25.3 ms