Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 MAGIX-207ENST00000615915 1757 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 TMEM8A-204ENST00000431232 3691 ntAPPRIS P2 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 FAM213B-205ENST00000444521 2827 ntAPPRIS ALT2 TSL 2 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 HHEX-201ENST00000282728 1727 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC18.06■□□□□ 0.48
CCDC28AQ8IWP9 GAL3ST2-201ENST00000192314 1370 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 ATRN-201ENST00000262919 8633 ntAPPRIS P4 TSL 5 BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 AC018445.3-201ENST00000624177 1945 ntBASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 PCDHB14-202ENST00000624896 2367 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 IQSEC2-218ENST00000640694 5958 ntAPPRIS ALT2 TSL 5 BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 SDS-201ENST00000257549 1606 ntAPPRIS P1 TSL 2 BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 SLMAP-201ENST00000295951 5433 ntAPPRIS P1 TSL 5 BASIC18.05■□□□□ 0.48
CCDC28AQ8IWP9 WAC-202ENST00000347934 2839 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 AC187653.1-201ENST00000506382 702 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 LINC01896-206ENST00000575722 1256 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 AC013394.1-201ENST00000629685 808 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 KLHL29-203ENST00000486442 5287 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 TM6SF1-204ENST00000379390 1638 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 PFN2-210ENST00000481767 1620 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 TMUB1-202ENST00000392818 1563 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 CNEP1R1-202ENST00000427478 2117 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 LSM6-202ENST00000502781 1352 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC28AQ8IWP9 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 PLPPR2-208ENST00000591608 2552 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 POLR3H-201ENST00000337566 1330 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 TMEM9B-201ENST00000309134 1659 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 RFC2-201ENST00000055077 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 ITGB3-202ENST00000571680 1668 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 MARK2-209ENST00000509502 2862 ntAPPRIS ALT2 TSL 2 BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 CDK11B-207ENST00000626918 2457 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 COPZ2-210ENST00000621465 895 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 GDI1-215ENST00000630693 786 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 VAV1-201ENST00000304076 2825 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 MIR219A2-201ENST00000608502 1504 ntBASIC18.03■□□□□ 0.48
CCDC28AQ8IWP9 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 FAM213B-201ENST00000378424 2765 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 PHYH-201ENST00000263038 1577 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 GAS6-201ENST00000327773 2490 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 MACF1-219ENST00000484793 834 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 AL359258.2-201ENST00000564063 1566 ntBASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 MIR7108-201ENST00000614319 87 ntBASIC18.02■□□□□ 0.48
CCDC28AQ8IWP9 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 FGF20-201ENST00000180166 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 LACTBL1-202ENST00000618559 1500 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 FAM129C-201ENST00000332386 2222 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 KCNS2-201ENST00000287042 5219 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 TMEM62-201ENST00000260403 2771 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC28AQ8IWP9 AC138932.1-201ENST00000534164 6830 ntBASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 NEIL3-201ENST00000264596 2408 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 YBX2-201ENST00000007699 1590 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 MIR3648-2-201ENST00000581792 180 ntBASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 MIR3648-1-201ENST00000615959 180 ntBASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 MIR6089-201ENST00000616698 64 ntBASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 DCAF4-201ENST00000353777 1940 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 RAX2-201ENST00000555633 2414 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC28AQ8IWP9 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 BX323043.1-201ENST00000641006 1765 ntBASIC18■□□□□ 0.47
CCDC28AQ8IWP9 SPIRE2-201ENST00000378247 3235 ntAPPRIS P2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 CR559946.2-201ENST00000623684 991 ntBASIC18■□□□□ 0.47
CCDC28AQ8IWP9 AC148477.6-201ENST00000623746 465 ntBASIC18■□□□□ 0.47
CCDC28AQ8IWP9 LSR-205ENST00000427250 1606 ntTSL 2 BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 DSCAM-201ENST00000400454 8552 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 TRABD2A-201ENST00000335459 1844 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 SNX4-201ENST00000251775 2513 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC28AQ8IWP9 CERS5-203ENST00000422340 2855 ntAPPRIS ALT2 TSL 2 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms