Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 ARL5A-202ENST00000428992 747 ntTSL 2 BASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 AC068587.7-201ENST00000641602 218 ntBASIC26.85■■□□□ 1.89
CCDC88AQ3V6T2 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 FAM185A-201ENST00000409231 1446 ntAPPRIS ALT2 TSL 2 BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 MDK-205ENST00000405308 1166 ntAPPRIS P2 TSL 2 BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 ADD3-AS1-204ENST00000627565 388 ntTSL 3 BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 AC005224.4-201ENST00000583262 1652 ntBASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC26.84■■□□□ 1.89
CCDC88AQ3V6T2 ARL16-209ENST00000573715 763 ntTSL 3 BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 ARL16-211ENST00000576135 694 ntTSL 3 BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 MBNL3-202ENST00000370844 1643 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 AC004687.1-201ENST00000579003 1625 ntBASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 PTPN2-202ENST00000327283 1706 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 TBC1D22A-202ENST00000355704 1886 ntTSL 1 (best) BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 PRR7-202ENST00000502922 1345 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC26.83■■□□□ 1.89
CCDC88AQ3V6T2 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC26.83■■□□□ 1.88
CCDC88AQ3V6T2 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
CCDC88AQ3V6T2 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC26.83■■□□□ 1.88
CCDC88AQ3V6T2 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC26.83■■□□□ 1.88
CCDC88AQ3V6T2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 EPCAM-202ENST00000405271 1530 ntTSL 5 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 FAM120B-204ENST00000625626 1794 ntAPPRIS ALT2 TSL 2 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 SBK2-201ENST00000344158 1056 ntAPPRIS P1 TSL 2 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 SBK2-202ENST00000413299 1085 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 ZSWIM7-205ENST00000472495 703 ntAPPRIS P1 TSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 RAPSN-205ENST00000529341 1408 ntTSL 1 (best) BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC26.82■■□□□ 1.88
CCDC88AQ3V6T2 MEIS3-201ENST00000331559 2104 ntAPPRIS ALT2 TSL 5 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 AC106738.1-201ENST00000560487 359 ntTSL 3 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 H1FX-201ENST00000333762 1507 ntAPPRIS P1 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 AC096677.1-201ENST00000454651 1516 ntTSL 2 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 EI24-211ENST00000534546 1544 ntTSL 2 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 FNDC11-201ENST00000370097 1119 ntAPPRIS P1 TSL 2 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 UPK3B-203ENST00000394849 1041 ntAPPRIS ALT2 TSL 2 BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC26.81■■□□□ 1.88
CCDC88AQ3V6T2 UCK2-201ENST00000367879 1375 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 LINC01529-204ENST00000636474 1715 ntBASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 ELF3-AS1-202ENST00000419190 788 ntTSL 2 BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC26.8■■□□□ 1.88
CCDC88AQ3V6T2 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 CBWD5-207ENST00000382405 1791 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC26.79■■□□□ 1.88
CCDC88AQ3V6T2 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 AP004608.1-201ENST00000531319 1402 ntTSL 2 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 STX4-201ENST00000313843 1481 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 PRORSD1P-201ENST00000295112 541 ntBASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 PHB2-213ENST00000546111 858 ntTSL 2 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 AC133041.1-202ENST00000642053 222 ntBASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 DTNB-206ENST00000404103 2384 ntAPPRIS ALT2 TSL 5 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 IRF3-201ENST00000309877 1691 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC26.78■■□□□ 1.88
CCDC88AQ3V6T2 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 TRAPPC6A-205ENST00000592647 514 ntTSL 2 BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 PFKL-212ENST00000628044 129 ntTSL 3 BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 ARRDC1-AS1-201ENST00000371417 1409 ntTSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 SERBP1-202ENST00000370990 1621 ntAPPRIS ALT2 TSL 1 (best) BASIC26.77■■□□□ 1.88
CCDC88AQ3V6T2 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC26.76■■□□□ 1.88
CCDC88AQ3V6T2 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC26.76■■□□□ 1.88
CCDC88AQ3V6T2 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC26.76■■□□□ 1.87
CCDC88AQ3V6T2 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC26.76■■□□□ 1.87
CCDC88AQ3V6T2 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC26.76■■□□□ 1.87
CCDC88AQ3V6T2 AC133552.2-202ENST00000575694 574 ntBASIC26.76■■□□□ 1.87
CCDC88AQ3V6T2 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC26.76■■□□□ 1.87
CCDC88AQ3V6T2 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC26.76■■□□□ 1.87
Retrieved 100 of 98,524 protein–RNA pairs in 24.2 ms