Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 C5orf58-204ENST00000521850 2113 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 EI24-204ENST00000527235 1625 ntTSL 5 BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL28A1Q2UY09 KCNQ2-201ENST00000344425 1426 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 RILP-201ENST00000301336 1771 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 KCNIP1-203ENST00000390656 2249 ntTSL 5 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 LGALS7-201ENST00000378626 466 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 ARHGAP24-206ENST00000503995 1273 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 MAZ-216ENST00000616501 991 ntTSL 5 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 EI24-213ENST00000618552 1747 ntTSL 5 BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 GATA1-202ENST00000376670 1497 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL28A1Q2UY09 FAM107B-211ENST00000468747 2633 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 NAB1-202ENST00000409581 2360 ntAPPRIS P3 TSL 2 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 KLC1-205ENST00000380038 2322 ntTSL 2 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 PON2-217ENST00000633192 1876 ntTSL 1 (best) BASIC20.79■□□□□ 0.92
COL28A1Q2UY09 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 CTDSPL-206ENST00000443503 4640 ntAPPRIS ALT1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 FAM21EP-202ENST00000456967 2177 ntTSL 2 BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 PRORSD1P-201ENST00000295112 541 ntBASIC20.78■□□□□ 0.92
COL28A1Q2UY09 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 METTL15-202ENST00000403099 795 ntTSL 5 BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 RPS2P52-201ENST00000469610 820 ntBASIC20.78■□□□□ 0.92
COL28A1Q2UY09 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 PRORSD1P-203ENST00000579162 626 ntTSL 5 BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 SPHK1-210ENST00000592299 1821 ntAPPRIS P3 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC20.78■□□□□ 0.92
COL28A1Q2UY09 AC068473.5-201ENST00000616428 2072 ntBASIC20.77■□□□□ 0.92
COL28A1Q2UY09 CPOX-201ENST00000264193 2825 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 CTDSP2-204ENST00000548823 1368 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 OR2I1P-207ENST00000453522 948 ntBASIC20.77■□□□□ 0.92
COL28A1Q2UY09 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 KISS1R-201ENST00000234371 1625 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL28A1Q2UY09 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC20.77■□□□□ 0.91
COL28A1Q2UY09 UBALD1-208ENST00000591401 1305 ntTSL 5 BASIC20.77■□□□□ 0.91
COL28A1Q2UY09 CHST6-202ENST00000390664 2093 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 MCUB-201ENST00000394650 2278 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 PPP2R2C-203ENST00000382599 1807 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL28A1Q2UY09 ACOT1-201ENST00000311148 1713 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 ADAMTS13-204ENST00000371911 1155 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 HOXD12-201ENST00000404162 841 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 AP006621.1-202ENST00000528982 464 ntTSL 2 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 TESC-206ENST00000541210 936 ntTSL 3 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 OAS3-207ENST00000551007 998 ntTSL 2 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 MFSD11-216ENST00000590393 1141 ntBASIC20.75■□□□□ 0.91
COL28A1Q2UY09 AP006294.2-201ENST00000641667 209 ntBASIC20.75■□□□□ 0.91
COL28A1Q2UY09 AC133041.1-202ENST00000642053 222 ntBASIC20.75■□□□□ 0.91
COL28A1Q2UY09 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 ELOA-201ENST00000418390 5154 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 CTSF-201ENST00000310325 2035 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL28A1Q2UY09 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 HOXD9-201ENST00000249499 1870 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
COL28A1Q2UY09 MLLT10-204ENST00000377091 905 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 72.6 ms