Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 BARX2-201ENST00000281437 1813 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDH1Q08174 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDH1Q08174 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 TMEM121-202ENST00000431372 1519 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PCDH1Q08174 OXCT2P1-201ENST00000447263 1535 ntBASIC20.92■□□□□ 0.94
PCDH1Q08174 ZNF37BP-201ENST00000435805 1695 ntTSL 5 BASIC20.92■□□□□ 0.94
PCDH1Q08174 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
PCDH1Q08174 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.92■□□□□ 0.94
PCDH1Q08174 RASGRP2-207ENST00000377497 2221 ntAPPRIS P2 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 LINC00565-201ENST00000562710 2331 ntBASIC20.92■□□□□ 0.94
PCDH1Q08174 SMOX-212ENST00000621355 2322 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 CHODL-201ENST00000299295 2548 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
PCDH1Q08174 NKX6-2-201ENST00000368592 2673 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH1Q08174 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
PCDH1Q08174 UCHL5-201ENST00000367448 1534 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH1Q08174 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PCDH1Q08174 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH1Q08174 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC20.91■□□□□ 0.94
PCDH1Q08174 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDH1Q08174 SH2D5-202ENST00000444387 1934 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
PCDH1Q08174 SLC47A1P1-202ENST00000449666 945 ntBASIC20.91■□□□□ 0.94
PCDH1Q08174 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH1Q08174 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC20.91■□□□□ 0.94
PCDH1Q08174 MYBL2-201ENST00000217026 2639 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
PCDH1Q08174 SH2D3A-201ENST00000245908 2296 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 ORAI1-202ENST00000617316 2138 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 TRIM54-202ENST00000380075 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
PCDH1Q08174 UNC93B3-201ENST00000308076 687 ntBASIC20.9■□□□□ 0.94
PCDH1Q08174 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
PCDH1Q08174 ZNF32-202ENST00000395797 1201 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 PTMA-205ENST00000410064 814 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 TYROBP-203ENST00000544690 522 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 TRAM2-AS1-204ENST00000606714 2453 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.9■□□□□ 0.94
PCDH1Q08174 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 BICDL2-201ENST00000389347 1811 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
PCDH1Q08174 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
PCDH1Q08174 PSKH1-202ENST00000570631 1509 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
PCDH1Q08174 DCTD-201ENST00000357067 1931 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 C19orf60-201ENST00000358607 839 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 BX842568.3-201ENST00000418104 571 ntBASIC20.89■□□□□ 0.93
PCDH1Q08174 C19orf60-202ENST00000450195 702 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 LGR4-201ENST00000379214 5206 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
PCDH1Q08174 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH1Q08174 SAXO1-201ENST00000380530 1727 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
PCDH1Q08174 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
PCDH1Q08174 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH1Q08174 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC20.88■□□□□ 0.93
PCDH1Q08174 S100A6-201ENST00000368719 665 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH1Q08174 NRL-205ENST00000560550 788 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH1Q08174 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH1Q08174 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC20.88■□□□□ 0.93
PCDH1Q08174 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 PELI3-201ENST00000320740 2740 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC20.87■□□□□ 0.93
PCDH1Q08174 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 IGHV3-20-201ENST00000390606 415 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDH1Q08174 PEMT-206ENST00000435340 960 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDH1Q08174 AC133561.4-201ENST00000566112 224 ntBASIC20.87■□□□□ 0.93
PCDH1Q08174 DAZAP1-211ENST00000592522 2157 ntAPPRIS ALT1 TSL 5 BASIC20.87■□□□□ 0.93
PCDH1Q08174 MYB-221ENST00000527615 2381 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDH1Q08174 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH1Q08174 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PCDH1Q08174 RBPJL-202ENST00000372741 1636 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 SOX18-201ENST00000340356 1864 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 RARG-201ENST00000338561 1836 ntAPPRIS ALT1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 SLC26A1-203ENST00000398520 1111 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 SMIM29-205ENST00000468145 903 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDH1Q08174 SMIM29-207ENST00000481533 1053 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH1Q08174 MIR4767-201ENST00000582827 78 ntBASIC20.86■□□□□ 0.93
PCDH1Q08174 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDH1Q08174 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC20.86■□□□□ 0.93
PCDH1Q08174 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC20.86■□□□□ 0.93
PCDH1Q08174 HMBS-201ENST00000278715 1501 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 31.4 ms