Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 AL031602.1-201ENST00000633169 911 ntBASIC21.02■□□□□ 0.96
FOXA1P55317 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 TBL1X-201ENST00000217964 5871 ntTSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC21.02■□□□□ 0.96
FOXA1P55317 ZNF784-201ENST00000325351 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.96
FOXA1P55317 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC21.02■□□□□ 0.95
FOXA1P55317 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA1P55317 MAIP1-201ENST00000295079 1495 ntAPPRIS P2 TSL 2 BASIC21.01■□□□□ 0.95
FOXA1P55317 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXA1P55317 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXA1P55317 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXA1P55317 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC21.01■□□□□ 0.95
FOXA1P55317 FASTK-212ENST00000482571 1764 ntTSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA1P55317 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.01■□□□□ 0.95
FOXA1P55317 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.01■□□□□ 0.95
FOXA1P55317 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA1P55317 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA1P55317 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA1P55317 GOLGA6L9-202ENST00000618348 1710 ntAPPRIS P1 TSL 5 BASIC21.01■□□□□ 0.95
FOXA1P55317 EFHD1-201ENST00000264059 2259 ntAPPRIS P1 TSL 1 (best) BASIC21.01■□□□□ 0.95
FOXA1P55317 COL8A2-203ENST00000481785 2036 ntTSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC21■□□□□ 0.95
FOXA1P55317 TFAP2A-202ENST00000379608 2576 ntAPPRIS ALT1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC21■□□□□ 0.95
FOXA1P55317 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21■□□□□ 0.95
FOXA1P55317 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC21■□□□□ 0.95
FOXA1P55317 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 ALDH5A1-204ENST00000491546 1699 ntTSL 5 BASIC21■□□□□ 0.95
FOXA1P55317 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC21■□□□□ 0.95
FOXA1P55317 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21■□□□□ 0.95
FOXA1P55317 TCF7L1-201ENST00000282111 2968 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 GUSBP5-201ENST00000418136 578 ntBASIC21■□□□□ 0.95
FOXA1P55317 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC21■□□□□ 0.95
FOXA1P55317 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC21■□□□□ 0.95
FOXA1P55317 AL117336.3-202ENST00000605499 489 ntTSL 3 BASIC21■□□□□ 0.95
FOXA1P55317 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC21■□□□□ 0.95
FOXA1P55317 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC21■□□□□ 0.95
FOXA1P55317 AC074143.1-203ENST00000518227 1473 ntAPPRIS ALT2 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 DECR2-201ENST00000219481 1615 ntAPPRIS P1 TSL 1 (best) BASIC21■□□□□ 0.95
FOXA1P55317 CHRNA7-203ENST00000454250 2093 ntAPPRIS ALT2 TSL 2 BASIC21■□□□□ 0.95
FOXA1P55317 TEAD2-201ENST00000311227 2164 ntAPPRIS P3 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 ZDHHC5-204ENST00000527985 2817 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.99■□□□□ 0.95
FOXA1P55317 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 ACAA1-202ENST00000333167 1785 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.99■□□□□ 0.95
FOXA1P55317 PHF7-201ENST00000327906 2130 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 C18orf8-214ENST00000615148 1958 ntTSL 5 BASIC20.99■□□□□ 0.95
FOXA1P55317 CBWD6-213ENST00000613716 1820 ntTSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 AC005229.4-201ENST00000610085 2198 ntBASIC20.99■□□□□ 0.95
FOXA1P55317 PDLIM3-203ENST00000284771 1672 ntAPPRIS P1 TSL 1 (best) BASIC20.99■□□□□ 0.95
FOXA1P55317 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXA1P55317 INPP1-201ENST00000322522 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA1P55317 AC026471.6-201ENST00000622954 1905 ntBASIC20.98■□□□□ 0.95
FOXA1P55317 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA1P55317 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXA1P55317 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC20.98■□□□□ 0.95
FOXA1P55317 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC20.98■□□□□ 0.95
FOXA1P55317 ADGRA2-202ENST00000412232 5651 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA1P55317 TM9SF3-201ENST00000371142 6141 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA1P55317 NKX2-5-201ENST00000329198 1709 ntAPPRIS P1 TSL 1 (best) BASIC20.98■□□□□ 0.95
FOXA1P55317 MIS18A-201ENST00000290130 1575 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 TUB-201ENST00000299506 2019 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.97■□□□□ 0.95
FOXA1P55317 USP45-205ENST00000472914 1617 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXA1P55317 DTNBP1-201ENST00000338950 1880 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 AC244015.2-201ENST00000616358 1861 ntBASIC20.97■□□□□ 0.95
FOXA1P55317 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 STX4-202ENST00000394998 1498 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXA1P55317 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXA1P55317 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXA1P55317 MIR3621-201ENST00000580529 85 ntBASIC20.97■□□□□ 0.95
FOXA1P55317 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
FOXA1P55317 GATM-206ENST00000558336 1522 ntTSL 2 BASIC20.97■□□□□ 0.95
FOXA1P55317 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 KIAA0895-204ENST00000415803 2865 ntTSL 1 (best) BASIC20.97■□□□□ 0.95
FOXA1P55317 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXA1P55317 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC20.97■□□□□ 0.95
FOXA1P55317 CCDC185-201ENST00000366875 2054 ntAPPRIS P1 BASIC20.97■□□□□ 0.95
FOXA1P55317 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC20.96■□□□□ 0.95
FOXA1P55317 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC20.96■□□□□ 0.95
FOXA1P55317 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.96■□□□□ 0.95
FOXA1P55317 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 EI24-211ENST00000534546 1544 ntTSL 2 BASIC20.96■□□□□ 0.95
FOXA1P55317 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC20.96■□□□□ 0.95
FOXA1P55317 AP002893.1-201ENST00000528885 684 ntTSL 2 BASIC20.96■□□□□ 0.95
FOXA1P55317 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC20.96■□□□□ 0.95
FOXA1P55317 AL356740.2-201ENST00000601559 647 ntBASIC20.96■□□□□ 0.95
Retrieved 100 of 98,524 protein–RNA pairs in 19.7 ms