Protein–RNA interactions for Protein: P46779

RPL28, 60S ribosomal protein L28, humanhuman

Known RBP Predictions only

Length 137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPL28P46779 NR6A1-201ENST00000344523 1846 ntAPPRIS ALT2 TSL 5 BASIC14.25□□□□□ -0.13
RPL28P46779 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
RPL28P46779 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 AC078883.1-201ENST00000442417 950 ntTSL 3 BASIC14.25□□□□□ -0.13
RPL28P46779 THA1P-201ENST00000590384 1145 ntBASIC14.25□□□□□ -0.13
RPL28P46779 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC14.25□□□□□ -0.13
RPL28P46779 TRIP6-201ENST00000200457 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 TMEM44-211ENST00000473092 1508 ntTSL 1 (best) BASIC14.25□□□□□ -0.13
RPL28P46779 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC14.25□□□□□ -0.13
RPL28P46779 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC14.24□□□□□ -0.13
RPL28P46779 RBM33-201ENST00000287912 1404 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC14.24□□□□□ -0.13
RPL28P46779 ZFAND2B-201ENST00000289528 1314 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 C9orf147-202ENST00000457681 561 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC14.24□□□□□ -0.13
RPL28P46779 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC14.24□□□□□ -0.13
RPL28P46779 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC14.24□□□□□ -0.13
RPL28P46779 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC14.24□□□□□ -0.13
RPL28P46779 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC14.24□□□□□ -0.13
RPL28P46779 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC14.24□□□□□ -0.13
RPL28P46779 SPATA5L1-201ENST00000305560 2570 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 BEX3-202ENST00000372634 753 ntTSL 2 BASIC14.23□□□□□ -0.13
RPL28P46779 GAK-223ENST00000628912 497 ntTSL 5 BASIC14.23□□□□□ -0.13
RPL28P46779 NRXN2-201ENST00000265459 6621 ntAPPRIS P3 TSL 5 BASIC14.23□□□□□ -0.13
RPL28P46779 WFDC1-201ENST00000219454 1534 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 RARG-204ENST00000543726 1779 ntTSL 2 BASIC14.23□□□□□ -0.13
RPL28P46779 AC007952.6-201ENST00000573168 2673 ntBASIC14.23□□□□□ -0.13
RPL28P46779 AC003957.1-201ENST00000625108 2673 ntBASIC14.23□□□□□ -0.13
RPL28P46779 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC14.23□□□□□ -0.13
RPL28P46779 SAMD8-202ENST00000372690 1654 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 CHRNB2-205ENST00000637900 2390 ntAPPRIS ALT1 TSL 5 BASIC14.23□□□□□ -0.13
RPL28P46779 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 ARMC9-201ENST00000349938 2300 ntAPPRIS P1 TSL 1 (best) BASIC14.23□□□□□ -0.13
RPL28P46779 GUCY1A3-210ENST00000513574 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 ZIM2-206ENST00000599935 2226 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 KCNK6-201ENST00000263372 5722 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 PRMT8-202ENST00000382622 2366 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 KRT18P24-201ENST00000344739 1156 ntBASIC14.22□□□□□ -0.13
RPL28P46779 C5orf38-202ENST00000397835 681 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 HAGHL-205ENST00000561546 1041 ntTSL 2 BASIC14.22□□□□□ -0.13
RPL28P46779 MIR4508-201ENST00000584178 70 ntBASIC14.22□□□□□ -0.13
RPL28P46779 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 MADCAM1-206ENST00000617201 1491 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 MADCAM1-207ENST00000619333 1485 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 MADCAM1-210ENST00000622462 1461 ntAPPRIS ALT2 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 CEBPA-201ENST00000498907 2631 ntAPPRIS P1 BASIC14.22□□□□□ -0.13
RPL28P46779 TBL1Y-202ENST00000355162 2376 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 GABRA2-214ENST00000515082 2366 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC14.22□□□□□ -0.13
RPL28P46779 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC14.22□□□□□ -0.13
RPL28P46779 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 AL353803.4-201ENST00000565882 1934 ntBASIC14.21□□□□□ -0.13
RPL28P46779 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 PAOX-206ENST00000480071 1324 ntTSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC14.21□□□□□ -0.13
RPL28P46779 PHLDA3-202ENST00000367311 2640 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC14.21□□□□□ -0.13
RPL28P46779 TMEM238-201ENST00000444469 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 ILDR2-208ENST00000529387 1238 ntTSL 5 BASIC14.21□□□□□ -0.13
RPL28P46779 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.13
RPL28P46779 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC14.21□□□□□ -0.13
RPL28P46779 RMND5A-201ENST00000283632 6301 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RPL28P46779 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RPL28P46779 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC14.21□□□□□ -0.14
RPL28P46779 RBM26-207ENST00000622611 5230 ntTSL 2 BASIC14.2□□□□□ -0.14
RPL28P46779 LARGE2-208ENST00000531526 2528 ntAPPRIS P3 TSL 2 BASIC14.2□□□□□ -0.14
RPL28P46779 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPL28P46779 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPL28P46779 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC14.2□□□□□ -0.14
RPL28P46779 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC14.2□□□□□ -0.14
RPL28P46779 AC120024.1-201ENST00000562672 995 ntBASIC14.2□□□□□ -0.14
RPL28P46779 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPL28P46779 TSPAN10-204ENST00000611590 1068 ntAPPRIS ALT2 TSL 1 (best) BASIC14.2□□□□□ -0.14
RPL28P46779 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC14.2□□□□□ -0.14
RPL28P46779 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC14.2□□□□□ -0.14
RPL28P46779 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC14.2□□□□□ -0.14
Retrieved 100 of 98,524 protein–RNA pairs in 15.1 ms