Protein–RNA interactions for Protein: P34223

SHP1, UBX domain-containing protein 1, yeast

Predictions only

Length 423 aa.

Protein		RNA				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	UniProt Accession	Gene	Ensembl Transcript ID	Length	Transcript Status	Prediction Score	Prediction z-Score	Detected Interaction
SHP1	P34223	ALB1	YJL122W	528 nt		4.02	□□□□□ -1.77
SHP1	P34223	GAB1	YLR459W	1185 nt		4.02	□□□□□ -1.77
SHP1	P34223	UAF30	YOR295W	687 nt		4.02	□□□□□ -1.77
SHP1	P34223	YPL077C	YPL077C	723 nt		4.02	□□□□□ -1.77
SHP1	P34223	CSH1	YBR161W	1131 nt		4.02	□□□□□ -1.77
SHP1	P34223	YCL022C	YCL022C	516 nt		4.02	□□□□□ -1.77
SHP1	P34223	ALE1	YOR175C	1860 nt		4.02	□□□□□ -1.77
SHP1	P34223	SER3	YER081W	1410 nt		4.02	□□□□□ -1.77
SHP1	P34223	SPB4	YFL002C	1821 nt		4.02	□□□□□ -1.77
SHP1	P34223	PHO87	YCR037C	2772 nt		4.02	□□□□□ -1.77
SHP1	P34223	CTK1	YKL139W	1587 nt		4.02	□□□□□ -1.77
SHP1	P34223	SPT10	YJL127C	1923 nt		4.01	□□□□□ -1.77
SHP1	P34223	YKR015C	YKR015C	1707 nt		4.01	□□□□□ -1.77
SHP1	P34223	TRS85	YDR108W	2097 nt		4.01	□□□□□ -1.77
SHP1	P34223	GIC2	YDR309C	1152 nt		4.01	□□□□□ -1.77
SHP1	P34223	YGL214W	YGL214W	486 nt		4.01	□□□□□ -1.77
SHP1	P34223	YGR161W-C	YGR161W-C	279 nt		4.01	□□□□□ -1.77
SHP1	P34223	ORM2	YLR350W	651 nt		4.01	□□□□□ -1.77
SHP1	P34223	MRPS17	YMR188C	714 nt		4.01	□□□□□ -1.77
SHP1	P34223	MCK1	YNL307C	1128 nt		4.01	□□□□□ -1.77
SHP1	P34223	YOR114W	YOR114W	885 nt		4.01	□□□□□ -1.77
SHP1	P34223	FSH3	YOR280C	801 nt		4.01	□□□□□ -1.77
SHP1	P34223	PWR1	PWR1	941 nt		4.01	□□□□□ -1.77
SHP1	P34223	SPP381	YBR152W	876 nt		4.01	□□□□□ -1.77
SHP1	P34223	YBR255C-A	YBR255C-A	363 nt		4.01	□□□□□ -1.77
SHP1	P34223	APP1	YNL094W	1764 nt		4.01	□□□□□ -1.77
SHP1	P34223	HPR1	YDR138W	2259 nt		4.01	□□□□□ -1.77
SHP1	P34223	RDS1	YCR106W	2499 nt		4	□□□□□ -1.77
SHP1	P34223	RTG3	YBL103C	1461 nt		4	□□□□□ -1.77
SHP1	P34223	RDI1	YDL135C	609 nt		4	□□□□□ -1.77
SHP1	P34223	YUH1	YJR099W	711 nt		4	□□□□□ -1.77
SHP1	P34223	YLR169W	YLR169W	354 nt		4	□□□□□ -1.77
SHP1	P34223	UBC12	YLR306W	567 nt		4	□□□□□ -1.77
SHP1	P34223	LDH1	YBR204C	1128 nt		4	□□□□□ -1.77
SHP1	P34223	YLR152C	YLR152C	1731 nt		4	□□□□□ -1.77
SHP1	P34223	FAT1	YBR041W	2010 nt		4	□□□□□ -1.77
SHP1	P34223	CHD1	YER164W	4407 nt		4	□□□□□ -1.77
SHP1	P34223	TRE2	YOR256C	2430 nt		3.99	□□□□□ -1.77
SHP1	P34223	PIB1	YDR313C	861 nt		3.99	□□□□□ -1.77
SHP1	P34223	CDC8	YJR057W	651 nt		3.99	□□□□□ -1.77
SHP1	P34223	HTA2	YBL003C	399 nt		3.99	□□□□□ -1.77
SHP1	P34223	YNL319W	YNL319W	441 nt		3.99	□□□□□ -1.77
SHP1	P34223	YOL162W	YOL162W	648 nt		3.99	□□□□□ -1.77
SHP1	P34223	TAF14	YPL129W	735 nt		3.99	□□□□□ -1.77
SHP1	P34223	MRP2	YPR166C	348 nt		3.99	□□□□□ -1.77
SHP1	P34223	RPS9B	YBR189W	588 nt		3.99	□□□□□ -1.77
SHP1	P34223	YRB30	YGL164C	1323 nt		3.98	□□□□□ -1.77
SHP1	P34223	CHK1	YBR274W	1584 nt		3.98	□□□□□ -1.77
SHP1	P34223	RRP17	YDR412W	708 nt		3.98	□□□□□ -1.77
SHP1	P34223	YER034W	YER034W	558 nt		3.98	□□□□□ -1.77
SHP1	P34223	RSM26	YJR101W	801 nt		3.98	□□□□□ -1.77
SHP1	P34223	NEJ1	YLR265C	1029 nt		3.98	□□□□□ -1.77
SHP1	P34223	GPI12	YMR281W	915 nt		3.98	□□□□□ -1.77
SHP1	P34223	DIA1	YMR316W	1011 nt		3.98	□□□□□ -1.77
SHP1	P34223	SSU72	YNL222W	621 nt		3.98	□□□□□ -1.77
SHP1	P34223	RFC3	YNL290W	1023 nt		3.98	□□□□□ -1.77
SHP1	P34223	CPR8	YNR028W	927 nt		3.98	□□□□□ -1.77
SHP1	P34223	STP22	YCL008C	1158 nt		3.98	□□□□□ -1.77
SHP1	P34223	THI7	YLR237W	1797 nt		3.98	□□□□□ -1.77
SHP1	P34223	RPB2	YOR151C	3675 nt		3.98	□□□□□ -1.77
SHP1	P34223	BCH2	YKR027W	2298 nt		3.97	□□□□□ -1.77
SHP1	P34223	PHO13	YDL236W	939 nt		3.97	□□□□□ -1.77
SHP1	P34223	DCV1	YFR012W	609 nt		3.97	□□□□□ -1.77
SHP1	P34223	RPB3	YIL021W	957 nt		3.97	□□□□□ -1.77
SHP1	P34223	RRG9	YNL213C	645 nt		3.97	□□□□□ -1.77
SHP1	P34223	OSW1	YOR255W	837 nt		3.97	□□□□□ -1.77
SHP1	P34223	HOS3	YPL116W	2094 nt		3.97	□□□□□ -1.77
SHP1	P34223	PMS1	YNL082W	2622 nt		3.97	□□□□□ -1.77
SHP1	P34223	GAC1	YOR178C	2382 nt		3.97	□□□□□ -1.77
SHP1	P34223	PST1	YDR055W	1335 nt		3.96	□□□□□ -1.77
SHP1	P34223	UBP10	YNL186W	2379 nt		3.96	□□□□□ -1.78
SHP1	P34223	STV1	YMR054W	2673 nt		3.96	□□□□□ -1.78
SHP1	P34223	SRS2	YJL092W	3525 nt		3.96	□□□□□ -1.78
SHP1	P34223	BMH1	YER177W	804 nt		3.96	□□□□□ -1.78
SHP1	P34223	ISC10	YER180C	804 nt		3.96	□□□□□ -1.78
SHP1	P34223	COS12	YGL263W	1143 nt		3.96	□□□□□ -1.78
SHP1	P34223	YLR163W-A	YLR163W-A	114 nt		3.96	□□□□□ -1.78
SHP1	P34223	RFM1	YOR279C	933 nt		3.96	□□□□□ -1.78
SHP1	P34223	YPR174C	YPR174C	666 nt		3.96	□□□□□ -1.78
SHP1	P34223	ARA1	YBR149W	1035 nt		3.96	□□□□□ -1.78
SHP1	P34223	YSH1	YLR277C	2340 nt		3.96	□□□□□ -1.78
SHP1	P34223	NUG1	YER006W	1563 nt		3.95	□□□□□ -1.78
SHP1	P34223	YCL075W	YCL075W	441 nt		3.95	□□□□□ -1.78
SHP1	P34223	SOL3	YHR163W	750 nt		3.95	□□□□□ -1.78
SHP1	P34223	PCL7	YIL050W	858 nt		3.95	□□□□□ -1.78
SHP1	P34223	YLR444C	YLR444C	303 nt		3.95	□□□□□ -1.78
SHP1	P34223	IMP4	YNL075W	873 nt		3.95	□□□□□ -1.78
SHP1	P34223	OXR1	YPL196W	822 nt		3.95	□□□□□ -1.78
SHP1	P34223	SLA1	YBL007C	3735 nt		3.95	□□□□□ -1.78
SHP1	P34223	OAF1	YAL051W	3144 nt		3.95	□□□□□ -1.78
SHP1	P34223	GLN4	YOR168W	2430 nt		3.95	□□□□□ -1.78
SHP1	P34223	MEF1	YLR069C	2286 nt		3.95	□□□□□ -1.78
SHP1	P34223	KTR6	YPL053C	1341 nt		3.95	□□□□□ -1.78
SHP1	P34223	CTR86	YCR054C	1692 nt		3.94	□□□□□ -1.78
SHP1	P34223	RPN4	YDL020C	1596 nt		3.94	□□□□□ -1.78
SHP1	P34223	UGA3	YDL170W	1587 nt		3.94	□□□□□ -1.78
SHP1	P34223	FKH2	YNL068C	2589 nt		3.94	□□□□□ -1.78
SHP1	P34223	PLP1	YDR183W	693 nt		3.94	□□□□□ -1.78
SHP1	P34223	REC104	YHR157W	549 nt		3.94	□□□□□ -1.78
SHP1	P34223	ARC19	YKL013C	516 nt		3.94	□□□□□ -1.78

Retrieved 100 of 7,029 protein–RNA pairs in 19.4 ms