Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 CFAP99-206ENST00000616117 1941 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 CYP21A1P-201ENST00000342991 1971 ntTSL 3 BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 LGR4-202ENST00000389858 5163 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
TRAV1-1A0A0B4J248 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 C17orf67-201ENST00000397861 2013 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 FAM3C-201ENST00000359943 2508 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 HPS6-201ENST00000299238 2649 ntAPPRIS P1 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 MIR3648-2-201ENST00000581792 180 ntBASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 MIR3648-1-201ENST00000615959 180 ntBASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 CTU2-202ENST00000453996 1751 ntAPPRIS ALT2 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 HSF2BP-201ENST00000291560 1899 ntAPPRIS P1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 ADGRA3-204ENST00000502482 2870 ntTSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC16.96■□□□□ 0.31
TRAV1-1A0A0B4J248 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC16.96■□□□□ 0.3
TRAV1-1A0A0B4J248 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV1-1A0A0B4J248 OXCT2P1-201ENST00000447263 1535 ntBASIC16.96■□□□□ 0.3
TRAV1-1A0A0B4J248 FMR1-208ENST00000440235 4271 ntTSL 1 (best) BASIC16.96■□□□□ 0.3
TRAV1-1A0A0B4J248 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 PCMT1-205ENST00000464889 1984 ntAPPRIS P3 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 UBE2E3-202ENST00000410062 1570 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 AC138647.1-201ENST00000427937 648 ntAPPRIS P1 TSL 5 BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 HES4-204ENST00000484667 667 ntTSL 3 BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 AC087393.1-201ENST00000582896 145 ntBASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 P2RX4-202ENST00000337233 2032 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 GJB6-203ENST00000400065 1805 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 FUBP3-201ENST00000319725 3124 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 WNT7B-202ENST00000409496 2285 ntAPPRIS ALT1 TSL 2 BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 OTOP1-201ENST00000296358 1864 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 TPCN2-208ENST00000637342 2856 ntTSL 5 BASIC16.95■□□□□ 0.3
TRAV1-1A0A0B4J248 CHST1-201ENST00000308064 2718 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 ZNRF2P2-203ENST00000454624 420 ntBASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 SEC11C-204ENST00000587834 1202 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 GDI1-215ENST00000630693 786 ntTSL 4 BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 NEU4-203ENST00000404257 2352 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 AP003356.1-202ENST00000517910 2770 ntTSL 2 BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 MGAT4B-201ENST00000292591 2446 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
TRAV1-1A0A0B4J248 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 GABARAPL3-202ENST00000624044 1851 ntBASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 EOMES-202ENST00000449599 2829 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 UAP1-201ENST00000271469 2377 ntAPPRIS ALT1 TSL 5 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 YBX3-202ENST00000279550 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 PMPCB-202ENST00000428154 1714 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 SLC39A4-201ENST00000276833 2297 ntTSL 2 BASIC16.93■□□□□ 0.3
TRAV1-1A0A0B4J248 FAM120A-201ENST00000277165 5118 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 SAE1-203ENST00000413379 2313 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 MLEC-202ENST00000412616 841 ntTSL 3 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 TMEM114-202ENST00000568335 899 ntTSL 3 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
TRAV1-1A0A0B4J248 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 KRTAP5-AS1-201ENST00000424148 2265 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 NPY4R-201ENST00000374312 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 NPY4R2-201ENST00000576178 1956 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 PPP1R3F-203ENST00000466508 1885 ntTSL 2 BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 LINC01529-204ENST00000636474 1715 ntBASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 EPS8L1-201ENST00000201647 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-202ENST00000324450 954 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
TRAV1-1A0A0B4J248 VEGFA-203ENST00000372055 1286 ntTSL 1 (best) BASIC16.91■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 17.4 ms