Protein–RNA interactions for Protein: Q9NZ43

USE1, Vesicle transport protein USE1, humanhuman

Predictions only

Length 259 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USE1Q9NZ43 ZNF688-201ENST00000223459 2506 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 C8orf82-201ENST00000313465 2186 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 NPW-202ENST00000566435 991 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USE1Q9NZ43 GSPT1-203ENST00000439887 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 AL391650.1-201ENST00000448923 1468 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
USE1Q9NZ43 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 DCK-201ENST00000286648 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 TCP11-202ENST00000311875 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
USE1Q9NZ43 PLCL1-201ENST00000428675 5125 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC20.16■□□□□ 0.82
USE1Q9NZ43 BRPF3-202ENST00000357641 6052 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.16■□□□□ 0.82
USE1Q9NZ43 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 RARRES2P2-201ENST00000394842 485 ntBASIC20.16■□□□□ 0.82
USE1Q9NZ43 BTBD19-201ENST00000409335 1214 ntTSL 5 BASIC20.16■□□□□ 0.82
USE1Q9NZ43 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC20.16■□□□□ 0.82
USE1Q9NZ43 MDFIC-208ENST00000614186 1068 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC20.16■□□□□ 0.82
USE1Q9NZ43 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 A1BG-201ENST00000263100 1722 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 SPHK1-202ENST00000392496 1779 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 TUB-203ENST00000534099 1759 ntTSL 2 BASIC20.16■□□□□ 0.82
USE1Q9NZ43 PWWP2A-205ENST00000523662 1819 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
USE1Q9NZ43 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 ERLEC1-202ENST00000378239 2271 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 ZNF584-201ENST00000306910 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC20.15■□□□□ 0.82
USE1Q9NZ43 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 GPR162-201ENST00000311268 2768 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC20.15■□□□□ 0.82
USE1Q9NZ43 STEAP2-207ENST00000402625 1372 ntTSL 5 BASIC20.15■□□□□ 0.82
USE1Q9NZ43 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 ATG4D-201ENST00000309469 1949 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 HADH-201ENST00000309522 1912 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
USE1Q9NZ43 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.82
USE1Q9NZ43 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
USE1Q9NZ43 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 MARCH2-201ENST00000215555 1376 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
USE1Q9NZ43 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 AC019171.1-201ENST00000601251 1056 ntBASIC20.14■□□□□ 0.81
USE1Q9NZ43 BRD4-212ENST00000630599 726 ntTSL 2 BASIC20.14■□□□□ 0.81
USE1Q9NZ43 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 OSR1-201ENST00000272223 1936 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 PRKAA1-202ENST00000354209 1918 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
USE1Q9NZ43 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC20.14■□□□□ 0.81
USE1Q9NZ43 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
USE1Q9NZ43 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 HSF4-225ENST00000584272 1549 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 KCNQ5-207ENST00000403813 6539 ntAPPRIS ALT2 TSL 5 BASIC20.13■□□□□ 0.81
USE1Q9NZ43 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 Z98882.1-201ENST00000622160 2253 ntBASIC20.13■□□□□ 0.81
USE1Q9NZ43 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC20.13■□□□□ 0.81
USE1Q9NZ43 DPYS-201ENST00000351513 2127 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.13■□□□□ 0.81
USE1Q9NZ43 GRTP1-202ENST00000375430 1834 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 CRB2-202ENST00000373631 5550 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
USE1Q9NZ43 PRRT4-207ENST00000535159 2897 ntAPPRIS P1 TSL 5 BASIC20.13■□□□□ 0.81
USE1Q9NZ43 OLA1-204ENST00000409546 2071 ntTSL 5 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 CLK3-202ENST00000395066 2621 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 RAP1B-204ENST00000393436 2049 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 ABLIM2-205ENST00000428004 2573 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 FAHD1-201ENST00000382666 1964 ntTSL 2 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 PHOX2B-201ENST00000226382 3030 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 DLX2-201ENST00000234198 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 CCDC88B-202ENST00000356786 4915 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 APOE-201ENST00000252486 1208 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 TCEA1-213ENST00000640041 1171 ntTSL 5 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 KLC3-204ENST00000585434 1764 ntAPPRIS ALT1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 RNF180-201ENST00000296615 1727 ntTSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 LINC01529-204ENST00000636474 1715 ntBASIC20.12■□□□□ 0.81
USE1Q9NZ43 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 CD7-207ENST00000584284 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.12■□□□□ 0.81
USE1Q9NZ43 LINC01521-201ENST00000504184 1943 ntBASIC20.12■□□□□ 0.81
USE1Q9NZ43 PHKA1-204ENST00000373545 6173 ntTSL 5 BASIC20.12■□□□□ 0.81
USE1Q9NZ43 UNC93B1-201ENST00000227471 2316 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC20.11■□□□□ 0.81
USE1Q9NZ43 DUSP9-202ENST00000370167 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
USE1Q9NZ43 SLC13A3-204ENST00000413164 2008 ntTSL 2 BASIC20.11■□□□□ 0.81
USE1Q9NZ43 MT2A-201ENST00000245185 786 ntAPPRIS P1 TSL 1 (best) BASIC20.11■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms