Protein–RNA interactions for Protein: Q9NNX9

VCX3A, Variable charge X-linked protein 3, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCX3AQ9NNX9 LINC01971-201ENST00000617888 1048 ntBASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 TTYH1-202ENST00000376530 1885 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.28■□□□□ 0.84
VCX3AQ9NNX9 WDR38-202ENST00000613760 1323 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 SOD3-201ENST00000382120 1526 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 DCAF4-206ENST00000509153 1521 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 UBALD2-203ENST00000589240 660 ntTSL 2 BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 AC079630.1-202ENST00000618127 1840 ntBASIC20.27■□□□□ 0.84
VCX3AQ9NNX9 TTLL1-201ENST00000266254 1645 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VCX3AQ9NNX9 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 ITGB1BP1-202ENST00000355346 1963 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 UBXN2A-202ENST00000404924 1557 ntAPPRIS P1 TSL 2 BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 ST3GAL5-231ENST00000639119 2131 ntTSL 5 BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 ITGA6-201ENST00000264107 5618 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 TTC36-201ENST00000302783 874 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 CXCL14-201ENST00000337225 1971 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 EDEM1-201ENST00000256497 6146 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VCX3AQ9NNX9 BRSK2-208ENST00000528841 3586 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 B3GAT3-201ENST00000265471 1641 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 ALKAL1-201ENST00000358543 1217 ntAPPRIS P2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 CCDC189-206ENST00000543610 1967 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VCX3AQ9NNX9 RREB1-203ENST00000379933 5826 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 GRM5-202ENST00000305447 4571 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 CTXN1-201ENST00000318978 1274 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 C16orf74-204ENST00000602719 1002 ntAPPRIS ALT2 TSL 3 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 LARGE2-202ENST00000401752 2516 ntAPPRIS P3 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 PDXK-205ENST00000398081 2251 ntTSL 2 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 LSM11-201ENST00000286307 6584 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 ARL4D-201ENST00000320033 1612 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 CPSF4-207ENST00000451876 1644 ntTSL 5 BASIC20.24■□□□□ 0.83
VCX3AQ9NNX9 GADD45GIP1-201ENST00000316939 1782 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 PPFIA1-202ENST00000389547 4133 ntAPPRIS ALT1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 AC078883.1-202ENST00000450443 1397 ntTSL 3 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 PSMD7-201ENST00000219313 1670 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 PDF-201ENST00000288022 1158 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 S100A10-202ENST00000368811 1202 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 AC016910.1-201ENST00000422799 1046 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 CLDN23-201ENST00000519106 2169 ntAPPRIS P1 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 ZNF554-201ENST00000317243 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 MMP17-201ENST00000360564 2411 ntAPPRIS P2 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 DPH7-201ENST00000277540 1847 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
VCX3AQ9NNX9 CDHR5-201ENST00000349570 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 ISLR2-204ENST00000453268 2812 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 UHRF1BP1L-202ENST00000356828 2023 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 EIF4E3-201ENST00000295612 2764 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 INPP5J-203ENST00000401755 1751 ntTSL 2 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 IZUMO4-202ENST00000395301 1021 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 SMIM12-205ENST00000456842 918 ntAPPRIS P1 TSL 2 BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC20.22■□□□□ 0.83
VCX3AQ9NNX9 ZNF398-202ENST00000475153 2860 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 35.2 ms